LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g03092	ATGTCACTCGCCTGTTCCTCAAAGAATGTCGAAAACAGGTCAAGTGATAGTATTGTTTCTGATGGTTTTGTCTTTGATATTGATCCTAGTTTGTTGCTGGATTTTGATAAACTGGTCATTGATGAGATCATCGGAGAAGGCTCAGATTCCATTGTATACCGAGGATGGTATGAAGATCATCCGGTGGCTATTAAAGCTATGCAACCGGAGAACACAAAGGATGCACCGCCTGAATCTAAGCTCAAATTCGAGAGGGAGGTGAAGCTTTTATCTAAGATTCAACATACAAATGTTGTAAAGTTTATTGGAGCCACTGTGGAACCATCAATGATGATAATCACAGAACTACTAGAAGGTGGTTCACTTCAGAAAACCATGAAGAGTATCTATCCAATAACTTTCTCATTGGAACAATGTTTGAGTTATGCTCTTGATATATCACAAGCTATGGAGTATTTGCATTCTAATGGCATCATTCACCGTGATCTCAAGCCTGGTAATTTACTGCTTACAAAAGACAAGAATAATATTAAACTTGCTGATTTTGGGATAGCTAGAGAGAATATATGTGATGAGATGACTTGTGAAGCTGGTACCTATAGATACATGGCTCCTGAGATTTTAAGCAAAGATCCACTTCCAAAAGGAGCAAAGAAAAGCTATGACCACAAAGCTGATGTGTACAGTTTTGGAATGGTTCTTTGGTCTATGATCAAAAACCAAACTCCATTTAAAGATAGAAAAGATTTCATGGCTGCATATGCTACCGTAAACAATATGAGGCCAAGTTTGGATGATTTTCCTGAAGTGATAACTCCCTTGGTGCAATCTTGTTGGAGTGAAGACCCAAAACTCAGACCAGAATTCAAGGAAATCACTGGAATGCTGATAAGGATTCTTCATGATATTTACACAGCAAAGATTAATGCACTTGCAAGGTTACAAAGGTTTGAAGATGTTATTAACAAAAGTGATGAAGAAATATCAAATGCACAACATGCTCCAACTAGCTTTGAATCAACTATGGAGAATGAAAACAACTCCAAACATGAGATTGAGACAATGAAGCCTAATGGTGAAACAGATAGTGATTCTGATCAGAAGAAGTCAAAAAAGAAAAATAAGATCAAACGCTTTTTTTCTTTTTTCCGTAGTTGCATTTGCTTTTGA	1170	0.3701	MSLACSSKNVENRSSDSIVSDGFVFDIDPSLLLDFDKLVIDEIIGEGSDSIVYRGWYEDHPVAIKAMQPENTKDAPPESKLKFEREVKLLSKIQHTNVVKFIGATVEPSMMIITELLEGGSLQKTMKSIYPITFSLEQCLSYALDISQAMEYLHSNGIIHRDLKPGNLLLTKDKNNIKLADFGIARENICDEMTCEAGTYRYMAPEILSKDPLPKGAKKSYDHKADVYSFGMVLWSMIKNQTPFKDRKDFMAAYATVNNMRPSLDDFPEVITPLVQSCWSEDPKLRPEFKEITGMLIRILHDIYTAKINALARLQRFEDVINKSDEEISNAQHAPTSFESTMENENNSKHEIETMKPNGETDSDSDQKKSKKKNKIKRFFSFFRSCICF	389

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi2g03092	389	Coils	Coil	314	334	-	-
Vivi2g03092	389	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	33	303	-	-
Vivi2g03092	389	ProSiteProfiles	Protein kinase domain profile.	38	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vivi2g03092	389	Pfam	Protein kinase domain	40	292	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vivi2g03092	389	PRINTS	Tyrosine kinase catalytic domain signature	267	289	IPR001245	GO:0004672\|GO:0006468
Vivi2g03092	389	PRINTS	Tyrosine kinase catalytic domain signature	152	170	IPR001245	GO:0004672\|GO:0006468
Vivi2g03092	389	PRINTS	Tyrosine kinase catalytic domain signature	114	127	IPR001245	GO:0004672\|GO:0006468
Vivi2g03092	389	PRINTS	Tyrosine kinase catalytic domain signature	225	247	IPR001245	GO:0004672\|GO:0006468
Vivi2g03092	389	MobiDBLite	consensus disorder prediction	328	373	-	-
Vivi2g03092	389	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	158	170	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g03092	Vivi-Chr2	130914584	130916606	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g03092	20	303	MAP Kinase Kinase Kinase	AT5G66710	52.281	7.30e-106	316

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vivi2g03092		Pkinase	1.6e-52	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g03092	-		K04427	gsj:114390113	393.275

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