LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g03072	ATGTCTTCCCCTGGTAACTCCTCGCCGGATAACTCTACACCAGATAATTCCACACCTGATAATAGTACCCCTGATGATGCCGATAACTCTTCGTCACCATCACAACCAACACCTTCAGAATCACCACCGCAATCTCCACCGCAATCTCCACCACCACAATCTCCACCTCCACAATCCCCACCACCATCACCACAATCCTCTCCACCTCCTTCACAATCCTCTCCACCTCCTGATCAATCACCTCCTTCACAATCACCTCCTAATCAATCACCTCCTGATCAATCACCGCCATCACCTTCACAATCTCAACCTTCTCCTTCACCACCAACATCAAACAATCCATCCCCACCATCACCAAATTCATCCTTCAATCCACCAACGCCGGCCGGAGGCCGTTCTTCACCTGGCTCCTCTGGATCCGAAAATTCACCATCGCCCCCGCAGAAATCATTACCACATTCATCATCCGGAAATTCCAATGGTGGTAATTTCGACAACGGTGATTCCATTAAGGCTATAATTGGAGCAGCGATTGGGGTGGGAGGTGTTCTTCTCATTATGATCGTCGTATGCGTTTTTTTCTCACGGAAGAAAAAAAATAAGCAGCAGATGTACTACTATGGAGATCATCCATCTCATGGAAAAGGGAATAACAACTATTACAACAGTGGACCACCCCCAAATTACTATGGAGGTCCACATGGGGAACATGTTGTTAGGCTACAAAATGGAATGGGTCCTAGTGGAATGGGTCCTAACGGAATGGGTCCTAATGGAATGGGTCATAATGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTTGGGGTGCACCTCCTATGATGATGAACAGTGCAGACATGAGTTCAAATTACTCTGGCGGGCCACCAGCTTTGCCTCCTCCATCACCAAGTCTTGCTTTAGGGCTTAAAGGGGGAACATTCACTTATGAGGAATTGGCAGCCGCAACCGATGGGTTCACTGATTCAAATTTGATAGGACAAGGTGGTTTTGGTTATGTCCATAAGGGTATATTACCCAGTGGAAAGGAAATAGCCGTCAAGAGTTTAAAATCGGGTAGTGGACAAGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTCCATCATCGCCATCTTGTTTCACTTGTTGGATATTGTATTTCTGGTGGCCAGAGAATGTTGGTGTATGAATTTATTCCCAATGAAACATTGGAGTATCACCTTCATGGAAAGGGTCGACCTACCATGGATTGGCCAACTAGAATGAGAATTGCAATTGGTTCTGCTAAAGGGCTTGCCTATCTTCACGAGGATTGTCATCCTCGCATCATCCATCGTGATATCAAAGCTGCAAATGTCCTCATTGATGATAGCTTTGAAGCAAAGGTTGCTGATTTTGGGTTGGCTAAGTTAACAACAGATAATAATACTCATGTATCAACTCGTGTCATGGGAACTTTCGGGTACCTAGCCCCAGAGTATGCATCAAGTGGAAAATTGACCGAAAAGTCTGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTTATAACTGGAAAGCGACCTGTGGATGCCACAAATGCCATGGACGACAGCTTAGTGGACTGGGCTCGACCACTACTGAACCGTGGACTAGAGGAGGATGGAAACTTTGGCGAGTTGGTGGATCCGTTTTTGGAAGGAAATTACAATCCTCAAGAACTCGCCAGAATGGCAGCCTGTGCTGCTGCTAGCATTCGCCATTCTGCCAAAAAGCGTTCTAAAATGAGCCAGATTGTAAGAACATTGGAAGGAGATGTCTCACTGGATGACTTGAAGGAGGGAATGAAAGCAGGGGGCCTCCCTGCTCATACCTCTTCATCTGGTAGCTCGGAGTACGACACAATGCAGTACAATGCCGACATGCAGAAATTCAGAAAGGCGGTGTTTAATAACAGCCAGGAATATGGCACCAGCAGCTTCTCCAGCGGCGAAAAGCCAAAGCCATAA	1995	0.4662	MSSPGNSSPDNSTPDNSTPDNSTPDDADNSSSPSQPTPSESPPQSPPQSPPPQSPPPQSPPPSPQSSPPPSQSSPPPDQSPPSQSPPNQSPPDQSPPSPSQSQPSPSPPTSNNPSPPSPNSSFNPPTPAGGRSSPGSSGSENSPSPPQKSLPHSSSGNSNGGNFDNGDSIKAIIGAAIGVGGVLLIMIVVCVFFSRKKKNKQQMYYYGDHPSHGKGNNNYYNSGPPPNYYGGPHGEHVVRLQNGMGPSGMGPNGMGPNGMGHNGGGGGGGGGGWGAPPMMMNSADMSSNYSGGPPALPPPSPSLALGLKGGTFTYEELAAATDGFTDSNLIGQGGFGYVHKGILPSGKEIAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFIPNETLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDATNAMDDSLVDWARPLLNRGLEEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSAKKRSKMSQIVRTLEGDVSLDDLKEGMKAGGLPAHTSSSGSSEYDTMQYNADMQKFRKAVFNNSQEYGTSSFSSGEKPKP	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g03072	664	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	179	643	IPR047117	-
	Vivi2g03072	664	Pfam	Protein tyrosine and serine/threonine kinase	329	529	IPR001245	GO:0004672\|GO:0006468
	Vivi2g03072	664	MobiDBLite	consensus disorder prediction	125	163	-	-
	Vivi2g03072	664	ProSiteProfiles	Protein kinase domain profile.	325	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g03072	664	MobiDBLite	consensus disorder prediction	36	124	-	-
	Vivi2g03072	664	Gene3D	Phosphorylase Kinase; domain 1	305	400	-	-
	Vivi2g03072	664	SUPERFAMILY	Protein kinase-like (PK-like)	307	598	IPR011009	-
	Vivi2g03072	664	SMART	serkin_6	325	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g03072	664	FunFam	Proline-rich receptor-like protein kinase PERK1	401	609	-	-
	Vivi2g03072	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	445	457	IPR008271	GO:0004672\|GO:0006468
	Vivi2g03072	664	Gene3D	Transferase(Phosphotransferase) domain 1	401	610	-	-
	Vivi2g03072	664	FunFam	proline-rich receptor-like protein kinase PERK1	303	400	-	-
	Vivi2g03072	664	PRINTS	Proline rich extensin signature	74	91	-	-
	Vivi2g03072	664	PRINTS	Proline rich extensin signature	55	71	-	-
	Vivi2g03072	664	PRINTS	Proline rich extensin signature	31	52	-	-
	Vivi2g03072	664	PRINTS	Proline rich extensin signature	12	24	-	-
	Vivi2g03072	664	ProSitePatterns	Protein kinases ATP-binding region signature.	331	353	IPR017441	GO:0005524
	Vivi2g03072	664	MobiDBLite	consensus disorder prediction	1	35	-	-
	Vivi2g03072	664	MobiDBLite	consensus disorder prediction	1	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g03072	Vivi-Chr2	130653409	130658322	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g03072	26	645	Trihelix Transcription Factor Family	AT1G70460	44.286	5.21e-148	444

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Vivi2g03072		PK_Tyr_Ser-Thr	1.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g03072	-		-	gmx:100777163	750.74