Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03066 ATGGCGGCTAACAACAAAGTGAAGAACGATGATCCTCCAGTAGAGTCACCTACGTCGGTCCTAGAAGAAGAGGAAGTGGATGTGAAGAAGGAGGAAGAGGTGGTTGCGGATGATGGATCTTCTCTTGTACCGAAATCGATGGTAGAGGAGGAAGAGAATTTGCTTAAAGCTCGTGCTAAGGAAGAGGAGGAACAGTTACAGGAGCCAGCGAGTCTCAATGAGTCGCAGTTTGATAAGTTGGATGAGCTTTTGACACAGACGAAACTGTACTCGGAGTTTCTTTTGGAGAAAATGGATGACATCACTTTGACTGCGGGTGAAGTTGCGGGTGAAGTAGTGATTAAGGAAGAGGATGAGAGTCAATTGGATACTAAGCCTAGAGGTCGTGGAAGAAAGAGAAAGGCAGCTAAACAATGCAATACTGGGAAAGCCAAAAAGGCAGTTGAAGCTATGATATCACGATCTAAAGAAAATGTGAAGACTGAAGATGTGAATTTGACTGAGGAAGAAAGAACTGAGAAAGAGCAGAGGGAGTTGGTGCCTTTACTAACTGGTGGGAAATTGAAATCTTATCAACTGAAGGGTGTAAAGTGGTTAATCTCCTTGTGGCAAAATGGACTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGGCTTCTTTCTCATCTTAAATCTAAAGGATTGGATGGGCCATATATGATTATTGCTCCTCTATCAACCCTCTCCAATTGGATGAACGAGATCTCTAGGTTTGCACCATCACTCCACGCTGTTATCTACCACGGTAACAGAGATGTGAGAGATGAAATCAGAAGGAAACATATGCCTAGAACAATTGGTCCTAACTTTCCCATAGTAATAACTTCTTATGAGATTGCAATGAATGATGCTAAGAAATTTTTCCGGGCATACAAATGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCACAATGCAAATTAGTGAAGATGTTGAAATTCATCAGTGTTGAAAATAAGCTTCTTTTGACCGGGACACCGCTCCAGAATAACTTGGCAGAGCTGTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCTTCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCGCCACTGGAGCATCAATGGAAGAATTGGAAGAGAAAAGAAGAAACCAGGTAGTGGCCAAGCTTCATGCAATTCTCAGGCCATTTCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTATTGTTGCCACGGAAAAAAGAGATCATTATTTATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGAACTTCTAGTTAAAAAGACATTCGAGAAAAATTTGGACAGGAAACTATCAATTGGGCGTGCTGTGGGTAGTCTTAATAACTTGATGATTCAACTTAGGAAAGTCTGCAACCATCCCGACCTCTTAGAATCACCCTTTGATGGTTCATATTTTTATCCTCCTTTGAATGAGATAATTGAGCAATGCGGAAAATTCCAATTGCTCAACCGGTTGTTGGAGCGGCTACTTGCACGTAATCACAAGGTTCTGATCTTCAGTCAGTGGACTAGAGTTTTAGATATAATGGATTATTATTTTAGTGAGAAGGGTTTTGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGATGACAGGAAAAGTCAGATCCAGGAATTCAATGATGTAAACAGCAATTTCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTTACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGATGTCATAGAATTGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCACAATCAGTAGAGGGTCGAATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCACGTGGTGATAGAGAAAGGACAATTTCATCAAGAACGCACAACGGCTTCCATTATGGATGAATTGGAGAGGAAATGGATCAGCCTAGCTCCAAGATTTTCCTGGAACTATGATGAAGCGGGCAGTCCATACTTAGTCTTGCACTAA 2112 0.4138 MAANNKVKNDDPPVESPTSVLEEEEVDVKKEEEVVADDGSSLVPKSMVEEEENLLKARAKEEEEQLQEPASLNESQFDKLDELLTQTKLYSEFLLEKMDDITLTAGEVAGEVVIKEEDESQLDTKPRGRGRKRKAAKQCNTGKAKKAVEAMISRSKENVKTEDVNLTEEERTEKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGLLSHLKSKGLDGPYMIIAPLSTLSNWMNEISRFAPSLHAVIYHGNRDVRDEIRRKHMPRTIGPNFPIVITSYEIAMNDAKKFFRAYKWKYLVVDEGHRLKNSQCKLVKMLKFISVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCATGASMEELEEKRRNQVVAKLHAILRPFLLRRMKSDVELLLPRKKEIIIYANMTEHQKSLQELLVKKTFEKNLDRKLSIGRAVGSLNNLMIQLRKVCNHPDLLESPFDGSYFYPPLNEIIEQCGKFQLLNRLLERLLARNHKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLDDRKSQIQEFNDVNSNFRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTTASIMDELERKWISLAPRFSWNYDEAGSPYLVLH 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03066 703 MobiDBLite consensus disorder prediction 17 31 - -
Vivi2g03066 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 669 IPR027417 -
Vivi2g03066 703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 368 IPR014001 -
Vivi2g03066 703 SMART helicmild6 540 624 IPR001650 -
Vivi2g03066 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 418 IPR027417 -
Vivi2g03066 703 SMART ultradead3 184 379 IPR014001 -
Vivi2g03066 703 MobiDBLite consensus disorder prediction 118 140 - -
Vivi2g03066 703 CDD SF2_C_SNF 500 634 - -
Vivi2g03066 703 PANTHER SNF2/RAD54 HELICASE FAMILY 43 667 - -
Vivi2g03066 703 Pfam Helicase conserved C-terminal domain 514 624 IPR001650 -
Vivi2g03066 703 Gene3D - 428 655 IPR027417 -
Vivi2g03066 703 FunFam ATP-dependent DNA helicase DDM1 182 427 - -
Vivi2g03066 703 Pfam SNF2-related domain 191 488 IPR000330 GO:0005524|GO:0140658
Vivi2g03066 703 MobiDBLite consensus disorder prediction 55 74 - -
Vivi2g03066 703 MobiDBLite consensus disorder prediction 1 48 - -
Vivi2g03066 703 Coils Coil 45 67 - -
Vivi2g03066 703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 670 IPR001650 -
Vivi2g03066 703 Gene3D - 183 427 IPR038718 -
Vivi2g03066 703 FunFam Chromatin complex subunit A 106 428 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03066 Vivi-Chr2 130599437 130605104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03066 156 645 RAD5 or RAD16-like Gene Family AT1G02670 27.145 1.86e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g03066 SNF2_N 2.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03066 K19001 - gmx:100777687 1047.34