Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03065 ATGGCGGCTAACAACAAAGTGAAGAACGATGATCCTCCAGTAGAGTCACCTACGTCGGTCCTAGAAGAAGAGGAAGTGGATGTGAAGAAGGAGGAAGAGGTGGTTGCGGATGATGGATCTTCTCTTGTACCGAAATCGATGGTAGAGGAGGAAGAGAATTTGCTTAAAGCTCGTGCTAAGGAAGAGGAGGAACAGTTACAGGAGCCAGCGAGTCTCAATGAGTCGCAGTTTGATAAGTTGGATGAGCTTTTGACACAGACGAAACTGTACTCGGAGTTTCTTTTGGAGAAAATGGATGACATCACTTTGACTGCGGGTGAAGTTGCGGGTGAAGTAGTGATTAAGGAAGAGGATGAGAGTCAATTGGATACTAAGCCTAGAGGTCGTGGAAGAAAGAGAAAGGCAGCTAAACAATGCAATACTGGGAAAGCCAAAAAGGCAGTTGAAGCTATGATATCACGATCTAAAGAAAATGTGAAGACTGAAGATGTGAATTTGACTGAGGAAGAAAGAACTGAGAAAGAGCAGAGGGAGTTGGTGCCTTTACTAACTGGTGGGAAATTGAAATCTTATCAACTGAAGGGTGTAAAGTGGTTAATCTCCTTGTGGCAAAATGGACTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGGCTTCTTTCTCATCTTAAATCTAAAGGATTGGATGGGCCATATATGATTATTGCTCCTCTATCAACCCTCTCCAATTGGATGAACGAGATCTCTAGGTTTGCACCATCACTCCACGCTGTTATCTACCACGGTAACAGAGATGTGAGAGATGAAATCAGAAGGAAACATATGCCTAGAACAATTGGTCCTAACTTTCCCATAGTAATAACTTCTTATGAGATTGCAATGAATGATGCTAAGAAATTTTTCCGGGCATACAAATGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCACAATGCAAATTAGTGAAGATGTTGAAATTCATCAGTGTTGAAAATAAGCTTCTTTTGACCGGGACACCGCTCCAGAATAACTTGGCAGAGCTGTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCTTCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCGCCACTGGAGCATCAATGGAAGAATTGGAAGAGAAAAGAAGAAACCAGGTAGTGGCCAAGCTTCATGCAATTCTCAGGCCATTTCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTATTGTTGCCACGGAAAAAAGAGATCATTATTTATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGAACTTCTAGTTAAAAAGACATTCGAGAAAAATTTGGACAGGAAACTATCAATTGGGCGTGCTGTGGGTAGTCTTAATAACTTGATGATTCAACTTAGGAAAGTCTGCAACCATCCCGACCTCTTAGAATCACCCTTTGATGGTTCATATTTTTATCCTCCTTTGAATGAGATAATTGAGCAATGCGGAAAATTCCAATTGCTCAACCGGTTGTTGGAGCGGCTACTTGCACGTAATCACAAGGTTCTGATCTTCAGTCAGTGGACTAGAGTTTTAGATATAATGGATTATTATTTTAGTGAGAAGGGTTTTGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGATGACAGGAAAAGTCAGATCCAGGAATTCAATGATGTAAACAGCAATTTCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTTACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGATGTCATAGAATTGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCACAATCAGTAGAGGGTCGAATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCACGTGGTGATAGAGAAAGGACAATTTCATCAAGAACGCACAACGGCTTCCATTATGGATGAATTGGAGGAAGAGGATATTTTGGCATTGCTTCAAGATGATGAAACAGCTGAGGACAAGATGATACAGAAAGATATTAGTGATGAAGACCTGGAGAATCTGTTGGATCGCAGTGATCTTGTTGTCAATAGCTCAGCTGATGTTAAACCTACAGCCAGTACCTTTCCCCTCAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCGTCTGGCGGCATGCTTTCCACTCTCAACAGTTAA 2265 0.4172 MAANNKVKNDDPPVESPTSVLEEEEVDVKKEEEVVADDGSSLVPKSMVEEEENLLKARAKEEEEQLQEPASLNESQFDKLDELLTQTKLYSEFLLEKMDDITLTAGEVAGEVVIKEEDESQLDTKPRGRGRKRKAAKQCNTGKAKKAVEAMISRSKENVKTEDVNLTEEERTEKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGLLSHLKSKGLDGPYMIIAPLSTLSNWMNEISRFAPSLHAVIYHGNRDVRDEIRRKHMPRTIGPNFPIVITSYEIAMNDAKKFFRAYKWKYLVVDEGHRLKNSQCKLVKMLKFISVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCATGASMEELEEKRRNQVVAKLHAILRPFLLRRMKSDVELLLPRKKEIIIYANMTEHQKSLQELLVKKTFEKNLDRKLSIGRAVGSLNNLMIQLRKVCNHPDLLESPFDGSYFYPPLNEIIEQCGKFQLLNRLLERLLARNHKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLDDRKSQIQEFNDVNSNFRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTTASIMDELEEEDILALLQDDETAEDKMIQKDISDEDLENLLDRSDLVVNSSADVKPTASTFPLKGPGWEVVIPTASGGMLSTLNS 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03065 754 MobiDBLite consensus disorder prediction 1 74 - -
Vivi2g03065 754 MobiDBLite consensus disorder prediction 17 31 - -
Vivi2g03065 754 Pfam Helicase conserved C-terminal domain 514 624 IPR001650 -
Vivi2g03065 754 FunFam Chromatin complex subunit A 106 428 655 - -
Vivi2g03065 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 697 IPR001650 -
Vivi2g03065 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 368 IPR014001 -
Vivi2g03065 754 SMART helicmild6 540 624 IPR001650 -
Vivi2g03065 754 SMART ultradead3 184 379 IPR014001 -
Vivi2g03065 754 MobiDBLite consensus disorder prediction 49 67 - -
Vivi2g03065 754 MobiDBLite consensus disorder prediction 118 140 - -
Vivi2g03065 754 CDD SF2_C_SNF 500 634 - -
Vivi2g03065 754 PANTHER SNF2/RAD54 HELICASE FAMILY 43 698 - -
Vivi2g03065 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 418 IPR027417 -
Vivi2g03065 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 710 IPR027417 -
Vivi2g03065 754 Pfam SNF2-related domain 191 488 IPR000330 GO:0005524|GO:0140658
Vivi2g03065 754 Coils Coil 45 67 - -
Vivi2g03065 754 Gene3D - 424 724 IPR027417 -
Vivi2g03065 754 Gene3D - 189 419 IPR038718 -
Vivi2g03065 754 FunFam ATP-dependent DNA helicase DDM1 182 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03065 Vivi-Chr2 130598863 130605104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03065 156 645 RAD5 or RAD16-like Gene Family AT1G02670 27.145 3.50e-42 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g03065 SNF2_N 2.7e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03065 K19001 - gmx:100777687 1150.96