Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03053 ATGCATCAACTTTCTTGCAACACTTCCTCTCAAGCACACGTCATGGGACACTGTACATGCGGTATGTTTCATGGACAAACACAAAACAATTCATTCTCTATGTTATTCTCTAAACCCTATGAAGAATCTCTTGAAACCTATTGCTTTACACCTTCTTCCACTTCTTCTTCTGTTGACTGTACTCTCTCACTTGGAACTCCTTCCACTCGTTTCACTGAAGATGAAGAGAAACGAAACCGACATGAACGTCGCTCTGTTAAAAACTTCTGTTGGGATTTACTAACTCCCAAACAGTACAACAGTACTCAAACAAAACCTACACGAGCAAGCAATATCAATAACAACAACAACAATAATGATTCTCTCCTTGCTCGCAGATGCGCTAACTGTGACACTACCTCTACACCCCTTTGGAGAAATGGTCCTCGTGGCCCAAAGTCACTGTGCAATGCGTGTGGGATTAGGTTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCTGCTGCTACACCGACTGCGGTATCCGTGGGTGTAATGGAATCAGCTCCTATGTATAACCACCACCACCACCATCACAACTCATGGTTTGTCCAACAGCAGAACCAGAAGACACAGTGCTTCTCTCAGGCAATTAGTAACGAATTTCGCTTCATGGAGGACACTGATCGTGATTCTGAGAATGGCATTCCATTTCTCTCTTGGAGACTCAACGTCACTGATAGAACAAGCTTCGTTCATGACTTTACCAGATGA 750 0.4373 MHQLSCNTSSQAHVMGHCTCGMFHGQTQNNSFSMLFSKPYEESLETYCFTPSSTSSSVDCTLSLGTPSTRFTEDEEKRNRHERRSVKNFCWDLLTPKQYNSTQTKPTRASNINNNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPTAVSVGVMESAPMYNHHHHHHNSWFVQQQNQKTQCFSQAISNEFRFMEDTDRDSENGIPFLSWRLNVTDRTSFVHDFTR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03053 249 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Vivi2g03053 249 SMART GATA_3 121 174 IPR000679 GO:0006355|GO:0043565
Vivi2g03053 249 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Vivi2g03053 249 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Vivi2g03053 249 PANTHER GATA TRANSCRIPTION FACTOR 18 13 249 IPR044272 GO:0003700|GO:0009908
Vivi2g03053 249 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Vivi2g03053 249 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 164 - -
Vivi2g03053 249 Gene3D - 123 166 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03053 Vivi-Chr2 130048890 130050530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03053 1 249 C2C2-Gata Transcription Factor Family AT3G50870 42.765 2.80e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi2g03053 GATA 6.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03053 - - mtr:11405635 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03053 2 130048890 130050530 Vivi2g03053 2 130048890 130050530 ECH
Vivi2g03053 2 130048890 130050530 Vivi1g03021 1 66495797 66496998 PCT