Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03040 ATGGAAACAAACATGTCACCAACAACTTTAGGTTACAATAGAGATTCTTCTTCTTCTTCACCAACTCCACCTCAAACAAACACATTAGTCTTCAGTAATCCACCACAAAATTCACACCTCAACAACAATCTTCATCCAGATCCAGATCTAATTGTTACAACAAGCACTTCTACTATCCCAATAACACCACAACAGACTACAACAACAGCAGCAGCAACAACAACTGCAACAACATCAGCAACAACAATAATATGTTATCGAGAATGTCTGAGAAACCACGCGGCAAGCATGGGAAGCCACGTGGTAGATGGATGTGGCGAGTTTATGCCAAGCGGTGAAGAAGGTACCCCACAATCATTCAAATGTGCTGCTTGTGATTGTCATCGAAACTTTCATCGAAAACATGTCCAATTACCACAACATCAACAGCAGCAGCAACAAGAACAACAACAAGAACGACAACATCAACAACAAACGCAACATGTTGTTAACAACGGTCACATACTTCAGTTTAACACACCGTCTTCATCATCTCAGAGATTCTCACACCCTACTACTTCCGGACATGTTCCACCGTTGATGATGACTTTCGGATCAGGTCCAGCTGAATCATCAAGTGAAGATCTCAACATGTTGGGTGCACAATTCTCAACACAGACGCAGCAGCATCAGCAGCAGCAACAGGCTTCTAAGAAGAGGATAAGGACGAAATTCTCACAGCTTCAAAAGGATAAGATGATGGAGTTTGCTCAGAAGATTGGGTGGAAGATCCAGAAACATGATGAACAAGAAGTTCAACAGTTTTGTTCTCAAGTTGGTATCAGAAGACAGGTTTTCAAAGTTTGGATGCATAATAATAAACAAGCTATGAAAAAAACAGGAAATATGCAGATAGTTGAGATGTGA 906 0.4095 METNMSPTTLGYNRDSSSSSPTPPQTNTLVFSNPPQNSHLNNNLHPDPDLIVTTSTSTIPITPQQTTTTAAATTTATTSATTIICYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPQSFKCAACDCHRNFHRKHVQLPQHQQQQQQEQQQERQHQQQTQHVVNNGHILQFNTPSSSSQRFSHPTTSGHVPPLMMTFGSGPAESSSEDLNMLGAQFSTQTQQHQQQQQASKKRIRTKFSQLQKDKMMEFAQKIGWKIQKHDEQEVQQFCSQVGIRRQVFKVWMHNNKQAMKKTGNMQIVEM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03040 301 MobiDBLite consensus disorder prediction 1 42 - -
Vivi2g03040 301 MobiDBLite consensus disorder prediction 137 186 - -
Vivi2g03040 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 65 288 - -
Vivi2g03040 301 Pfam ZF-HD protein dimerisation region 84 136 IPR006456 -
Vivi2g03040 301 MobiDBLite consensus disorder prediction 136 189 - -
Vivi2g03040 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 86 135 IPR006456 -
Vivi2g03040 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 86 135 IPR006456 -
Vivi2g03040 301 SUPERFAMILY Homeodomain-like 221 292 IPR009057 -
Vivi2g03040 301 Gene3D - 216 293 - -
Vivi2g03040 301 FunFam Zinc-finger homeodomain protein 2 218 292 - -
Vivi2g03040 301 NCBIfam homeobox domain, ZF-HD class 231 288 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03040 Vivi-Chr2 129768771 129772795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03040 86 292 ZF-HD Transcription Factor Family AT2G18350 50.472 2.35e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi2g03040 ZF-HD_dimer 4.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03040 - - mtr:11413632 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03040 2 129768771 129772795 Vivi2g03040 2 129768771 129772795 ECH