Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03034 ATGTCGTTGAGAAGTATAGTAAGGGAACTTAAAGAAATGAGGGATGGGATTGGTAACACGTCGAGGCGAGGTGTAGGAAGTAGGCATTCTCAGCGTCGGACGAAGTCACACATTGTTCCTGATATCACGCTAACGTCACTTGAACCTATTCAGCAGGGACAATGGGCAAATATACCATCTGAATTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTGCTTGTGCTTCCGTGTGTAAATCATGGAGGGCCGTCACAAGAGAGATTGTCCAGACTCCCGAGCAGTGTGGAAGGCTGACATTTCCTATTTCATTAAAGCAGCCGGGTCCTCGTGATTCTCCGATTCAGTGCTTCATCAGGAGGGACCGAGAAACTTCTGCATATCTATTGTACTATGGATTGGTGCCATCTGAAAATGAGACTGATAAGCTGCTATTAGCTGCCAAAAAGATAAGGAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCCGATGATTTTTCTCGGTCCAGCAATGCCTACGTTGGAAAACTCAGGTCTAATTTTTTGGGCACCAAGTTCACTATATATGACAGCCAACCTCCACATGGAGCTGGAATTCAACCAACTAGTCGGTCCAGTAGGAGATTCCATTCTAAGCAGGTATCTCCAAGAGTTTCAGCATGTAACTATGTTGTTAGCACCGTTGCCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCCAGAAGAATGAACTGCATCATGACCTCGATACCCGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAACATTTTTGTTCCGCCCCAGCACCAAAAGGTAAAGGTCCAATTGGAGATTTAAGCAATTCAACCTTCTCAGAGATGCTGCCGGTACAGAGCCAAGGCCCAATTGATTCTCTGGTACTTAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAACTTCAAGGGCCGTGTTACAGTGGCTTCGGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCCGCAGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAAATTGGAAAAGATATATTTACTATGGATTATCGGTATCCACTCTCTGCCTTCCAAGCATTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1248 0.4551 MSLRSIVRELKEMRDGIGNTSRRGVGSRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVACASVCKSWRAVTREIVQTPEQCGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPTSRSSRRFHSKQVSPRVSACNYVVSTVAYELNVLRTRGPRRMNCIMTSIPVSAVQEGGNAPTPTSFPQITDEHFCSAPAPKGKGPIGDLSNSTFSEMLPVQSQGPIDSLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03034 415 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Vivi2g03034 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
Vivi2g03034 415 Gene3D Tubby Protein; Chain A 113 415 IPR025659 -
Vivi2g03034 415 Pfam F-box domain 55 101 IPR001810 GO:0005515
Vivi2g03034 415 CDD F-box_AtTLP-like 55 99 - -
Vivi2g03034 415 PANTHER TUBBY-RELATED 48 413 - -
Vivi2g03034 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Vivi2g03034 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Vivi2g03034 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Vivi2g03034 415 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vivi2g03034 415 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vivi2g03034 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Vivi2g03034 415 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vivi2g03034 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Vivi2g03034 415 Gene3D - 48 104 - -
Vivi2g03034 415 Pfam Tub family 116 410 IPR000007 -
Vivi2g03034 415 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03034 Vivi-Chr2 129659322 129662863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03034 1 415 TUB Transcription Factor Family AT2G18280 62.981 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi2g03034 Tub 3.8e-107 CL0395