Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03019 ATGAATGACTTGATGACAAAAAGTTTCCTAAGTTATGTAGAATTGAAGAAACAGGCGCAGAAGGATTTTCAACAAGATCCTGACATTGAACTAGGGAACCTCAACCCAACACAAGACCCTAATCTCTCTCAATTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTGTCAGATCTTCAGCAACTGAATGAGGAGACTAAATCGACTCACAGTGCGAAAGTTTTACGCGGGCTAAGAGACCGAATGGATTCCGATATGGTTGCCGTGCTTCGCAAGGCGAATGTGATCAAGGCAAGATTAGAGGCTCTTCAGAAATCAAACATCGCGAATCGAAGCATGTCAGAATGCTACAGAGAAGGGAGTCCTGTTGATCGAACCAGAGTGTCTGTCACGAGTGGTTTGAAGGTCAAGCTTAGGGACATGATGAATGATTTTCAGTCTCTAAGGGACAAGATTGTGTTGGATCATAAGGAAGATTTGAAGAGAAGGTACTATGCTGTAACGGGCGATGTTCCTAGCGATGAGGTTATGGAGAAGATGATATCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACGGATGCTGATATGGGTACTCAGGTTAGGCACGAGGCGGTGATGGATATTCAGAGGAGTTTGAATAAGCTTCATCAGGTTTTTCTTGATATGGCTATTTTGGTGGAGACTCAAGGAGAAAAAATGGATAACATTGAAGATAATGTGGTGAATGCTGGTCACTACATTCATGGCGGAACTAATAATCTTTATTATGCAAGCCAGTTGAAGAAGAGGAACAGGAAATGGATCTATTGGGTCATAGCTGTTTTGTTGATTGTAGTGCTGGTGTGTATCATTGCAATGGTGTCTTCTTGA 897 0.4214 MNDLMTKSFLSYVELKKQAQKDFQQDPDIELGNLNPTQDPNLSQFFQEVEAIKVEMEEITNLLSDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKANVIKARLEALQKSNIANRSMSECYREGSPVDRTRVSVTSGLKVKLRDMMNDFQSLRDKIVLDHKEDLKRRYYAVTGDVPSDEVMEKMISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKMDNIEDNVVNAGHYIHGGTNNLYYASQLKKRNRKWIYWVIAVLLIVVLVCIIAMVSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03019 298 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Vivi2g03019 298 SMART tSNARE_6 199 266 IPR000727 -
Vivi2g03019 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Vivi2g03019 298 CDD SNARE_syntaxin1-like 208 263 - -
Vivi2g03019 298 FunFam Syntaxin 132 199 297 - -
Vivi2g03019 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Vivi2g03019 298 Gene3D - 200 297 - -
Vivi2g03019 298 CDD SynN 42 192 IPR006011 GO:0016020
Vivi2g03019 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Vivi2g03019 298 Pfam SNARE domain 241 290 IPR000727 -
Vivi2g03019 298 Coils Coil 49 76 - -
Vivi2g03019 298 Gene3D - 37 170 - -
Vivi2g03019 298 SUPERFAMILY t-snare proteins 39 259 IPR010989 GO:0016020|GO:0016192
Vivi2g03019 298 PANTHER SYNTAXIN 45 288 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03019 Vivi-Chr2 129201711 129203344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03019 1 298 SNARE and Associated Proteins AT2G18260 57.003 4.16e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03019 K08486 - gmx:112997615 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03019 2 129201711 129203344 Vivi2g03019 2 129201711 129203344 ECH