Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02994 ATGAGATCCCCTATGTTTGGTGGTTTCTCTTCCTCATTCACAAACATTGGTTCAGCATCATCATGGTTCGAGATATACGCTGCCTTTTCCACATTCATGATGCTCTTAAGAACAGCAATCAACGATCTCATTCCCTTCAAGCTTCGAAACTACATCATCTCAAAACTCACATCTCTCTTCACAAATTACCAACCCAACAACCAAGTCTCACTTCAAATCGACCAGTTTTGGGATGGAATGACCAACCATCTCTACTACGCAGCCAAAGAGTATCTCCCTACTAAAATATCCAACACTTACAAATCCCTCAAAGTTGGCAAAATATCCAAACACAACAACGTTCTCTTAGCTTTCGATGGAAAACAAGTAGTCACTGACGAGTTTGAAGAAATCAAAGTTAAATGGAAGCTTGTTGAAAACTCCAAAGATGACGAACTTTTCGAAAATCCCAGGAAGGAATTTAAGCATCATAGTAAGTCCAAAGACTACGATGAAAACGGGTTTGTGTTAAGTTTTGATGAGAAATATAGGGAAAAAGTAATGAAGAAGTATATTCCACATATTTTAAGCACCTATGAAACTTTAAAAGCAGGAAATAGAACTCTCAAGATTCATTCTATGCAATCTGGTCCTTGGAAACAAAGTGATTTAACACATCCTGCTTCATTTGATTCAATTGCTTTGGATCCTGATCTAAAGAAAGATATAATTGATGATTTAGACAGGTTCTTGAGGAGGAAGAAGCTTTATCAAAAAGTGGGTAAGCCTTGGAAACGTGGGTATCTTTTGTATGGTCCACCAGGGACAGGAAAATCTAGTCTTATTGCTGCTATAGCAAAGTACTTGAAATTTGATGTATATGATTTGGATCTAAGTTCAGTGTTTTCTAACTCGGAACTCATGAGAGCCATGAGAGAGACTTCTAACAGATCTATCATCGTCTTTGAAGATATTGACTGCAACACTGAGGTGCTTGATCGATCAAAATCAGACAAATTTTCAGATAATGATTTTTTAGACACTCCCGGTGGTGTTAAGATGGTTAAGAACATGCCTATGCCAATGCCGAGAAAGTTTACTCTTTCGGGTCTTCTTAACTATATGGATGGATTGTGGTCGAGCTGCGGAGAGGAAAGGATTTTGATATTTACTACAAATCATAAAGACAAAGTTGATTCTGCGTTGTTGCGTCCCGGTCGAATGGATATGCATATTCATTTGTCATTTCTTAAAGGCAGGGCATTTAGAATCTTAGCTTCTAATTATTTGGACATTGAAGAACAGCATGGTCCACTCATTGAACAAATTGAGGAGCTATTGGGAAAAGTTGATGTCACGCCTGCAGTAGCAGCAGAGTATTTGTTGAGAAGTGAGGATCCTAGTGTTGCTCTTGAAGCACTTGTTAAATTTCTTCAAGAAATTGATGTTTCAAAAGTTGTTGTAAATGATGAGAATAATCAGAAAGTTTAG 1470 0.3762 MRSPMFGGFSSSFTNIGSASSWFEIYAAFSTFMMLLRTAINDLIPFKLRNYIISKLTSLFTNYQPNNQVSLQIDQFWDGMTNHLYYAAKEYLPTKISNTYKSLKVGKISKHNNVLLAFDGKQVVTDEFEEIKVKWKLVENSKDDELFENPRKEFKHHSKSKDYDENGFVLSFDEKYREKVMKKYIPHILSTYETLKAGNRTLKIHSMQSGPWKQSDLTHPASFDSIALDPDLKKDIIDDLDRFLRRKKLYQKVGKPWKRGYLLYGPPGTGKSSLIAAIAKYLKFDVYDLDLSSVFSNSELMRAMRETSNRSIIVFEDIDCNTEVLDRSKSDKFSDNDFLDTPGGVKMVKNMPMPMPRKFTLSGLLNYMDGLWSSCGEERILIFTTNHKDKVDSALLRPGRMDMHIHLSFLKGRAFRILASNYLDIEEQHGPLIEQIEELLGKVDVTPAVAAEYLLRSEDPSVALEALVKFLQEIDVSKVVVNDENNQKV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02994 489 SMART AAA_5 257 411 IPR003593 GO:0016887
Vivi2g02994 489 Gene3D - 406 476 - -
Vivi2g02994 489 PANTHER BCS1 AAA-TYPE ATPASE 27 473 - -
Vivi2g02994 489 Pfam ATPase family associated with various cellular activities (AAA) 262 321 IPR003959 GO:0005524|GO:0016887
Vivi2g02994 489 Pfam ATPase family associated with various cellular activities (AAA) 360 407 IPR003959 GO:0005524|GO:0016887
Vivi2g02994 489 ProSitePatterns AAA-protein family signature. 379 397 IPR003960 GO:0005524|GO:0016887
Vivi2g02994 489 Gene3D - 214 405 IPR027417 -
Vivi2g02994 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 459 IPR027417 -
Vivi2g02994 489 Pfam Domain associated at C-terminal with AAA 44 138 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02994 Vivi-Chr2 128910546 128912413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02994 231 407 Calmodulin-binding Proteins AT3G56690 27.568 4.05e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02994 - K08900 gmx:100787726 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02994 2 128910546 128912413 Vivi2g02994 2 128910546 128912413 ECH
Vivi2g02994 2 128910546 128912413 Vivi5g05988 5 164393689 164395659 PCT