Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02992 ATGAGATCCCCTATGTTTGGCGGCTTCTCTTCCTCCTTCACAAACATCGGCTCAGCATCATCATGGTTCGAGATATACGCTGCCTTTTCCACATTCATGATGCTCTTAAGAACAGCAATCAACGATCTCATACCCATCAAACTTCGAAACTTCATCATCTCAAAACTCTCATCTTTCTTCACAAATTACCAACCCAACAACCAAGCCTCACTTCAAATCGACCGGTTTTGGGATGGAATCACCAACCATCTCTACTGCGCAGCCAAAGAGTATCTCCCAACTAAAATATCCAACACTTACAAATCCCTCAAAGTTGGCAAACTATCCAAACATCACAACGTTCTCTTTGCTTTTGATGGAAAACAAGTAGTGACGGATGAGTTTGAAGATATCAAAGTTAAATGGAAGCTTGTTGGAAAATCCAAAGATGATGATGAACTTTTAAAAAATCCCAGGAGGCGTCATAATAAGTCGAATGACTACGATGAAAACGGATTTGTGTTAAGTTTTGATGAGAAATATAGGGAAAAAGTAATGAAGAAGTATATTCCACATATTTTAACCACTTATGAAACTTTAAAAGCAGAAAATAGAACTCTCAAGATTCATTCTATGCAATCTGGTTCTTGGATACAAAGTGATTTAACACACCCTGCTTCATTTGAGTCAATTGCTTTAGATCCTGATCTAAAGAAATCTATAATTGATGATATAGATAGGTTCTTGAGGAGGAAGAAGCTTTATCACAAAGTGGGTAAACCTTGGAAACGTGGGTATCTTTTGTATGGTCCACCAGGGACAGGAAAATCTAGTCTTATTGCTGCTATAGCTAAGTACTTGAAATTTGATGTCTATGATTTGGATCTTAGTTCGGTGTTTTCTAACTCGGACCTCATGAGAGTCATGAGAGAGACATCTAACAGATCTATCGTCGTCTTCGAAGATATTGACTGCAATAGTGAGGTGCTTGATCGATCAAAATCAGACCAATTTTCAGATAATGATTTTTTAGACACTCTTGCTGGTGCTAAGATGGTTAAGACAAAGTTTACTCTTTCGGGTCTTCTTAATTATGTGGATGGATTGTGGTCGGGCTGTGGAGAGGAAAGAATTTTGATATTTACTACAAATCATAAAGACAAAGTTGATTCTGCGTTACTGCGTCCCGGTCGAATGGATATGCATATTCACTTATCATTTCTTAAAGGCAAGGCATTTAGAATCTTAGCTTCTAATTATTTGGACATTGAAGAACAACATGGTCCACTCATTGAACAAATTGAGGAGCTATTGGGAAAAGTTGATGTCACGCCTGCAGTAGCAGCAGAATATTTATTGAGAAGTGAGGATCCTAATGTTGCTCTTGAAGGACTTGTTAAATTTCTTCAAGAAATTGATGCTTCAAAAGTTGTTGTAAATGAAGAGAATAATCAGAAAGTTTAG 1443 0.3735 MRSPMFGGFSSSFTNIGSASSWFEIYAAFSTFMMLLRTAINDLIPIKLRNFIISKLSSFFTNYQPNNQASLQIDRFWDGITNHLYCAAKEYLPTKISNTYKSLKVGKLSKHHNVLFAFDGKQVVTDEFEDIKVKWKLVGKSKDDDELLKNPRRRHNKSNDYDENGFVLSFDEKYREKVMKKYIPHILTTYETLKAENRTLKIHSMQSGSWIQSDLTHPASFESIALDPDLKKSIIDDIDRFLRRKKLYHKVGKPWKRGYLLYGPPGTGKSSLIAAIAKYLKFDVYDLDLSSVFSNSDLMRVMRETSNRSIVVFEDIDCNSEVLDRSKSDQFSDNDFLDTLAGAKMVKTKFTLSGLLNYVDGLWSGCGEERILIFTTNHKDKVDSALLRPGRMDMHIHLSFLKGKAFRILASNYLDIEEQHGPLIEQIEELLGKVDVTPAVAAEYLLRSEDPNVALEGLVKFLQEIDASKVVVNEENNQKV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02992 480 CDD RecA-like_BCS1 234 398 - -
Vivi2g02992 480 Pfam Domain associated at C-terminal with AAA 44 138 IPR025753 -
Vivi2g02992 480 Pfam ATPase family associated with various cellular activities (AAA) 260 398 IPR003959 GO:0005524|GO:0016887
Vivi2g02992 480 Gene3D - 211 396 IPR027417 -
Vivi2g02992 480 Gene3D - 397 466 - -
Vivi2g02992 480 SMART AAA_5 255 402 IPR003593 GO:0016887
Vivi2g02992 480 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
Vivi2g02992 480 PANTHER BCS1 AAA-TYPE ATPASE 27 466 - -
Vivi2g02992 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 450 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02992 Vivi-Chr2 128811284 128813141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02992 221 398 Calmodulin-binding Proteins AT3G56690 24.731 1.05e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02992 - K08900 gmx:100787726 580.482