Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02979 ATGACAAACAACATTGGTAAGGGTCTCATCCATTATAAAGTTACAGACTCAAATGATGACCCCATAAATCCCAAACCTGGAACGTTGAGATATGGAGCTTCAGTAATCCAAGGCAAAGTGTGGATCACATTCCAAAAAGACATGAATATTAGACTAATGAAACCGCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGTGGCGTCAACGTGCATATTGCTAATAATGCATGCTTGATGATATTCAAGGCCACCAACATAATAATTCATAGTATTCGAATTCATCATTGCAAAGCTCAAGCCCCAGGGATGGTAATGGGACCAAATGGAAAGGTTATTTCTTTGGGCCAAGTAGATGGAGATGCAATTAGACTGGTCACCGCTTCAAAAATTTGGATTGATCATAATACGCTTTATAATTGTGAAGATGGTCTTCTTGATGTCACACGAGGCTCTACTGATGTGACTATTTCCAGTAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGACATGATGATGGATATGTAAGGGACTTAAACATGAAGGTTACTGTGGTGTACAATCATTTTGGACCAAATTGTAACCAACGAATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAACATTTATTTAGGTTGGATGCAATATGCCATTGGTGGAAGTATGGGGCCTAGCCTCAAAAGTGAATCTAACCTCTTCATAGCACCAAAAGATGGGAGTAAAGAGGTAACATGGAGAAACAATGATCGTACAAATAGAGACAAATGGGAGTTTCATTCAAAAGGGGATGCATTTAAAAATGGAGCTTCATTTGCAGCAACAGAAGGAGGACGTGTGCGAAAGCCTAATTATAATAAAGAACAAAGTTTTAAAGTAGTTGATGTCAAATCTGTTCGATCACTGACACGATCATCAGGTGCATTTCAATGTAGTAGGACCTCTATATGTTGA 966 0.3872 MTNNIGKGLIHYKVTDSNDDPINPKPGTLRYGASVIQGKVWITFQKDMNIRLMKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLYNCEDGLLDVTRGSTDVTISSNWFREQDKVMLLGHDDGYVRDLNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNIYLGWMQYAIGGSMGPSLKSESNLFIAPKDGSKEVTWRNNDRTNRDKWEFHSKGDAFKNGASFAATEGGRVRKPNYNKEQSFKVVDVKSVRSLTRSSGAFQCSRTSIC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02979 321 SUPERFAMILY Pectin lyase-like 7 280 IPR011050 -
Vivi2g02979 321 Gene3D - 3 314 IPR012334 -
Vivi2g02979 321 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Vivi2g02979 321 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Vivi2g02979 321 PRINTS Pollen allergen Amb family signature 292 315 IPR018082 -
Vivi2g02979 321 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Vivi2g02979 321 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Vivi2g02979 321 PRINTS Pollen allergen Amb family signature 261 285 IPR018082 -
Vivi2g02979 321 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Vivi2g02979 321 PANTHER PECTATE LYASE 18-RELATED 6 317 IPR045032 GO:0030570
Vivi2g02979 321 SMART amb_all 47 244 IPR002022 -
Vivi2g02979 321 Pfam Pectate lyase 58 238 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02979 Vivi-Chr2 128558101 128559596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02979 1 260 Polysaccharide Lyase AT5G09280 70.385 5.27e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02979 K01728 - gmx:100780437 565.074