Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02978 ATGGCTGGTATTTTTTCATTAGGAGGTAGTGGAGGGAGGTGTGACGAAGAAGATAATCCAGAAAACAATCCTATTAATAATATCAACCCACCACCACCACCAGAATTTTGGTACAATACCAATCCCGGCAACAAACCCGATGATTCTGTTGGCGGATACCGTGGTTTTGAGATTTGGAACCAGCAGCAGCAACAACAACAGCACCACCAGTTTTTGCCTATGCAGCAAGATCTTTACACTGGTGTTGCGTTAGGAGTGGGGCCAAGTAGGGTTTTGTCTTCTGATGAGAATAGATCTGCGTTTGTGGTGGCTTCTGGAAGTGTTGGAGGGATCAGCTGTCAAGATTGTGGAAATCAGGCGAAGAAAGATTGTCCTCATGCTCGGTGTAGGACATGCTGTAAGAGTAGAGGCTTTGATTGTCAAACTCATGTGAAGAGTACTTGGGTTCCCGCTGCAAGAAGAAGAGAGAGACAACAACAGCAGCAACAACAGCAACAACAAGCTGTTCCGAAACCACAACCTCACTACGGAGATATCGTTACCGAAACCAGACAGAGAGATCTTAACAACAACCAAATCCCTAATTCTGCTCTAGCTTGTGCTCGTTTACCTTCAAACCCTCTCCCAACAGCAGGGTTAGTAGATCAGGAGGTGAATTTTCCGGCTGTGGTGAACTCTCCGGCGGAGTTTCGGTGCGTTCGAGTTACATCCGTTGATGAGTCGGAGGAAGAGATTGCATATTCAACTGCTGTGAACATCGGAGGGCATGTTTTCAGAGGAATTTTGTATAATTATGGTCCAGATATGAATAACAACTATATCACTGCCGGAAACACCCCTCCTGGCGGCGAAGCGGCGGCTCTGCCGTTGAATCTGGTCCCAGGCTCAACTGTCCCTGGGGAACTTGTTGATCCTGCTTCGATGTATCCAGCTCCTCTCAGCACTTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCAACCAAAGATCTTGA 993 0.4723 MAGIFSLGGSGGRCDEEDNPENNPINNINPPPPPEFWYNTNPGNKPDDSVGGYRGFEIWNQQQQQQQHHQFLPMQQDLYTGVALGVGPSRVLSSDENRSAFVVASGSVGGISCQDCGNQAKKDCPHARCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQQQAVPKPQPHYGDIVTETRQRDLNNNQIPNSALACARLPSNPLPTAGLVDQEVNFPAVVNSPAEFRCVRVTSVDESEEEIAYSTAVNIGGHVFRGILYNYGPDMNNNYITAGNTPPGGEAAALPLNLVPGSTVPGELVDPASMYPAPLSTFMPPSGTQFFPNQRS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02978 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 314 IPR007818 GO:0003700|GO:0006355
Vivi2g02978 330 NCBIfam LRP1 C-terminal domain 220 267 IPR006511 -
Vivi2g02978 330 MobiDBLite consensus disorder prediction 25 39 - -
Vivi2g02978 330 NCBIfam putative zinc finger domain, LRP1 type 112 154 IPR006510 -
Vivi2g02978 330 MobiDBLite consensus disorder prediction 1 50 - -
Vivi2g02978 330 MobiDBLite consensus disorder prediction 154 171 - -
Vivi2g02978 330 MobiDBLite consensus disorder prediction 154 177 - -
Vivi2g02978 330 Pfam Domain of unknown function (DUF702) 110 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02978 Vivi-Chr2 128497666 128499872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02978 1 330 C2H2 Transcription Factor Family AT3G51060 41.388 4.17e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi2g02978 DUF702 4.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02978 - - gmx:100814589 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00536 3 9050673 9052027 Vivi2g02978 2 128497666 128499872 ECH
Vivi2g02978 2 128497666 128499872 Vivi2g02978 2 128497666 128499872 ECH