Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02966 ATGGGTCGTGGGAAGATAGAGATAAAGTTGATTGAGAATCCAACAAACAGGCAAGTGACATACTCAAAGAGAAGGAATGGTATATTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAAAACAACAAGATGCATGAATACATCACCCCTGGTCTCAGTACAAAGAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAGAACTTGAAGAAACTGAAGGATATTAACAATAAACTTAGAAGACAGATCAGGCATAGAATAGGTGAAGGTGGTTTGGAATTGGATGATCTGAGTTTCCAGCAACTGAGAAGTCTTGAAGAAGATATGGTTTCTTCCATTGCCAAAATTCGCGAGAGGAAGTTTCATGTGATCAAAACTAGGACTGATACATGTAGGAAAAAGGTTAGAAGTTTGGAGCAGATGAATGGAAACCTACTTCTTGAACTAGAAAAGTGTGTGATCCATCCACAGTTTCTTTTCCATGATGAAGGAGATGAGGAATCAGCAGTTGCATTGGCCAATGGTGCTTCCACCTTGTATGCATTCTGTCAACACCATTCTCATATGAATATTCCTCACCACCATGGAGGAGAAGGCGGATTTAAAGACGATTTGCGCCTCGCTTGA 696 0.4037 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGGLELDDLSFQQLRSLEEDMVSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHMNIPHHHGGEGGFKDDLRLA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02966 231 Coils Coil 85 105 - -
Vivi2g02966 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g02966 231 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vivi2g02966 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi2g02966 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g02966 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g02966 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g02966 231 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g02966 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vivi2g02966 231 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vivi2g02966 231 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g02966 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g02966 231 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vivi2g02966 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02966 Vivi-Chr2 128115037 128116669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02966 1 228 MADS-box Gene Family AT3G54340 47.162 2.54e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi2g02966 K-box 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02966 K09264 - gmx:100784496 391.349