Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02965 ATGGGTCGTGGGAAGATAGAGATAAAGTTGATTGAGAATCCAACAAACAGGCAAGTGACATACTCAAAGAGAAGGAATGGTATATTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAAAACAACAAGATGCATGAATACATCACCCCTGGTCTCAGTACAAAGAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAGAACTTGAAGAAACTGAAGGATATTAACAATAAACTTAGAAGACAGATCAGGCATAGAATAGGTGAAGGTGGTTTGGAATTGGATGATCTGAGTTTCCAGCAACTGAGAAGTCTTGAAGAAGATATGGTTTCTTCCATTGCCAAAATTCGCGAGAGGAAGTTTCATGTGATCAAAACTAGGACTGATACATGTAGGAAAAAGGTTAGAAGTTTGGAGCAGATGAATGGAAACCTACTTCTTGAACTAAAGGAAAAGTGTGTGATCCATCCACAGTTTCTTTTCCATGATGAAGGAGATGAGGAATCAGCAGTTGCATTGGCCAATGGTGCTTCCACCTTGTATGCATTCTGTCAACACCATTCTCATATGAATATTCCTCACCACCATGGAGGAGAAGGCGGATTTAAAGACGATTTGCGCCTCGCTTGA 699 0.4034 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGGLELDDLSFQQLRSLEEDMVSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHMNIPHHHGGEGGFKDDLRLA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02965 232 Coils Coil 85 105 - -
Vivi2g02965 232 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g02965 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g02965 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vivi2g02965 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi2g02965 232 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g02965 232 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vivi2g02965 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vivi2g02965 232 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vivi2g02965 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g02965 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g02965 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g02965 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g02965 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02965 Vivi-Chr2 128115037 128116673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02965 1 229 MADS-box Gene Family AT3G54340 46.288 8.28e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi2g02965 K-box 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02965 K09264 - gmx:100784496 397.897