Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02962 ATGCTTTACCAAACTCCCTATCCTCTTCTCTTTCAATTTCATCCTTTACCTTCTTCTTCTTGTTCCACCATTCCCAAAGTTCCTCTCTTTTCTCATCTACCTACTAAACAGGTTGAGAAAACAGAAATGGAGTGCGTTGAAACAGCGTTGAAGACAAGTTTAAGGAAAGACATGGCACCTCAAACAATTGTCGATGATGTTACGGGACTTAATGGACCAAATGGAACAACAACCTCGGACGATTTTTTCGTTGACGACCTCCTTGATTTCTCTCACGTTGATGAACAACAACAAAACGAGGAAGAAGACTATGCTTGTGTCACTCTCAAACAAAGCAATGAAATTTCCAACCTTGACAACAGTTTCTCTCTCCAACAAGATTACGGTTCTTTACCCACCACCGACCTCAACGTTCCGAATGATGATGTTGCGGACTTGGAATGGCTTTCTCATTTTGTTGAAGATTCTGATTCCTTCTCGGAATTCTCTGCTGCTATGCCGGTTGTAACTTTAACAGCAACGGAGAAAAAACCAATGGTTCTTCCTGAGCCGAAGCCGGAGAAGAAAACCCCGGTTGTCACTTTCAAAACTCCGGTTCAGACCAAAGCTAGAAGCAAAAGAACAAGAACCGGTGTTCGGGTTTGGCCATTCGGGTCAACTTCGTTAACGGATTCTTCTACAAGTTCAACTTCATCTTCAACATCTTCCTCTCCTACTAGCCCTTTGTTGATTTACACCAACGTGCCACAAAGTTTCGACTCGGTTCCGGTGAAGAAACCGAAGAAAATGACGAGTTTCAATGGTTCGGGTCACGGTGCGGTGGCTCCGCCGCCGCGCCGGTGCAGTCATTGCGGTGTGCAGAAGACACCTCAGTGGAGAACTGGACCACTTGGAGCAAAAACGCTTTGTAACGCATGTGGGGTCCGTTATAAATCGGGTCGGTTATTACCCGAATACCGACCCGCTTGTAGCCCTACTTTTTCAAATGAATTGCACTCCAACCACCACCGGAAGGTTCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGCGGTGTTGAAATTGAAACCGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCCAGTTTTTGA 1110 0.4586 MLYQTPYPLLFQFHPLPSSSCSTIPKVPLFSHLPTKQVEKTEMECVETALKTSLRKDMAPQTIVDDVTGLNGPNGTTTSDDFFVDDLLDFSHVDEQQQNEEEDYACVTLKQSNEISNLDNSFSLQQDYGSLPTTDLNVPNDDVADLEWLSHFVEDSDSFSEFSAAMPVVTLTATEKKPMVLPEPKPEKKTPVVTFKTPVQTKARSKRTRTGVRVWPFGSTSLTDSSTSSTSSSTSSSPTSPLLIYTNVPQSFDSVPVKKPKKMTSFNGSGHGAVAPPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSNELHSNHHRKVLEMRRKKEVVGGVEIETETGLSPSPVVPSF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02962 369 ProSiteProfiles GATA-type zinc finger domain profile. 275 311 IPR000679 GO:0006355|GO:0043565
Vivi2g02962 369 CDD ZnF_GATA 280 329 IPR000679 GO:0006355|GO:0043565
Vivi2g02962 369 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 277 338 - -
Vivi2g02962 369 Gene3D - 275 348 IPR013088 GO:0006355|GO:0008270
Vivi2g02962 369 PANTHER GATA TRANSCRIPTION FACTOR 71 347 - -
Vivi2g02962 369 SMART GATA_3 275 329 IPR000679 GO:0006355|GO:0043565
Vivi2g02962 369 FunFam GATA transcription factor 272 356 - -
Vivi2g02962 369 ProSitePatterns GATA-type zinc finger domain. 281 306 IPR000679 GO:0006355|GO:0043565
Vivi2g02962 369 MobiDBLite consensus disorder prediction 198 241 - -
Vivi2g02962 369 MobiDBLite consensus disorder prediction 214 241 - -
Vivi2g02962 369 Pfam GATA zinc finger 281 315 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02962 Vivi-Chr2 128000743 128002399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02962 47 369 C2C2-Gata Transcription Factor Family AT5G66320 46.067 2.89e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi2g02962 GATA 5.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02962 - - psat:127120186 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03086 1 68186196 68187587 Vivi2g02962 2 128000743 128002399 ECH
Vivi2g02962 2 128000743 128002399 Vivi2g02962 2 128000743 128002399 ECH
Vivi2g02962 2 128000743 128002399 Vivi1g03086 1 68186196 68187587 PCT