Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02948 ATGATGGAGTCCATGGAGTCTTGTGTCCCACCAGGCTTTCGTTTCCACCCAACTGATGAAGAACTTGTTGGTTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGATCTTGATGTCATCAGAGAGATCGATCTTTATCGTATCGAACCATGGGATCTTCAAGATAGATGCAGGATAGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCACAAAGATAAAAAGTATCCAACAGGTACAAGAACCAACAGAGCTACCATGGCTGGATTTTGGAAAGCTACAGGAAGAGATAAATCAGTTTATGACAAGATGAAACTAATTGGAATGAGGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGTCCTCCACAGGAGGAAGGGTGGGTTGTTTGTAGGGCATTTAAGAAAAGAGCAACAAACAACCAAAGTACAAAAAGTAATATGGAAAGATGGGACACAAGCTATTTCTATGAAGAAGGTGCAAGTAGGGTCAACAATTCCATGGTGGATCCAATTGAGCTTATCTCAAGGCAACCTCAAAGCTATTTATCTCAAACTTACAATATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAGTTTATACAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCAATAATAAAAAGGCCAAGCTCAGTGTCTCTAGTATCATCAGAGAATAATAACACCGATGATATCGATGATCAAAACAGGTTGTTATTATTATCATCATCCAACAACAATAATATCGCTACAAATAATGTTACTGCTGATTGGAGAGATCTGGATAAGTTTGTGGCATCTCAATTGAGTCATGAAGTTGAAATTGATCAAGGAGTGCTCTCAAGTTTTGGTGGAACAAATAATGTTCCAAGCTCAGATATGGCATTGCTGTTAATGCAGCAAGGTGGTACTGGTAGGGATGAAGGGAACAAGTTTTTAAATGCAACCTCAGATTGCAGTGATATTGGAATATGCATATTTGAAAAATGA 1068 0.382 MMESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATNNQSTKSNMERWDTSYFYEEGASRVNNSMVDPIELISRQPQSYLSQTYNMCKQEIEACMHAEQFIQLPQLESPSLPIIKRPSSVSLVSSENNNTDDIDDQNRLLLLSSSNNNNIATNNVTADWRDLDKFVASQLSHEVEIDQGVLSSFGGTNNVPSSDMALLLMQQGGTGRDEGNKFLNATSDCSDIGICIFEK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02948 355 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Vivi2g02948 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 240 - -
Vivi2g02948 355 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Vivi2g02948 355 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Vivi2g02948 355 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Vivi2g02948 355 FunFam NAC domain-containing protein 18 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02948 Vivi-Chr2 127790032 127793380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02948 2 354 NAC Transcription Factor Family AT2G18060 61.436 8.23e-154 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g02948 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02948 - - aprc:113869508 508.064