Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02946 ATGCATGCGTTTCTTCTCATTTTGTTACTCTGCGCACCTTTCTTATCCTACGCCGATCGCAGCGCCATAACCGTTACAGAGATCCAAGCCTTAACGTCGTTTAAGCTCAACCTCCATGATCCTCTCGGAGCTCTCGACGGTTGGGATACCTCCTCGCCGGAAGCGCCGTGTGACTGGCGCGGAGTTGCCTGCAATAACGACCGAGTTACTGAGCTGCGTTTGCCTCGTCTTCAACTCGGTGGTAGACTCAGTGAACGTCTTTCTGAGTTGCGCATGTTGAGGAAGATAAGCCTTCGTTCGAATTTCTTCAACGGGAGTATCCCTTCGTCGCTCATGAAATGTAAGCTTCTACGGTTCTTGTTCTTGCAGGATAATGCGTTTTCCGGTAACGTTCCGCCGGAGATCGGAAACCTCACCGGTCTTCAGATTCTTAATGTTGCTCAGAATAATCTCTCCGGAACTGTTCCGAGGGAGCTTCCTCTTAGTCTCAAGTATCTTGACCTTTCGTCGAACGCTTTCTCCGGCGAGATTCCGGGGACTGTTGCTAATTTATCTCATCTTCAACTTATCAACCTTTCGTACAATGAGTTCTCCGGTGAGATTCCGGTGATGTTTGGGGAGCTTCAGAAACTGCAATATCTATGGCTTGACCATAACTTCCTTGGAGGAACCTTACCTTCTGCACTTGCTAATTGCTCTTCGCTCGTGCATCTGAGCGCAGAGGGAAATGCACTCGGCGGCGTGCTTCCGTCGGCGATAACGGCGCTTCCGAATCTTCAGGTGATTTCTCTTTCTCAGAATAATCTTACTGGTTCCATTCCTGCTTCCGTTTTCTGTAATGTTTCGTTCCATGCGCCGTCTCTGCGGATTGTTCAACTTGGATTCAATTTTTTCACGGGTTTTGTTGAGCTCGAGACCAGCACGTGTTTTAGTCTTCTTCAGGTTTTGGATATTCAACACAATAGCATAAGAGGCACGTTTCCCTTGTGGTTAGCCAATATAGCCACGTTGTCAGTGCTTGATCTTTCCTGCAATGCACTTTCCGGTGAGGTTCCGTCGTATATAGGAAATCTCGCTGCGTTGAAGGAGTTGAAGATGGCTAATAATTCATTTACTGGTGTCATTCCGGTGGAGATCAAGAAATGTGGGTCCCTTGGTGTTGTTGATCTTGAAGGCAACAATTTTGCCGGAGAAGTTCCTTCTTTTTTTGGTGATATGAAGGGACTCAAGGTTCTATCTCTTGGTGAAAACAGCTTCGTGGGGTCAGTTCCGGTGAGTTTTGGTAACCTTTCCTTACTCGAAACCTTGAGTTTGAGAAGCAGTAGATTGAATGGAACTATGCCTGAAATGATAATGAGGTTGAGCAATTTGACAACACTGGACCTTAGTGATAACAAGTTTACAGGTGAAATTTATGATAGTATTGGGAACTTGAATAGATTAATAGTTCTCAATCTGAGTGGTAATGGCTTCTCTGGAAAAATTCCTTCTAGCTTGGGAAATCTTTTCAGACTAACTACACTTGATTTGAGCAAGCAGAATCTCTCTGGGGAGTTACCTTTTGAGCTCTCTGGGCTACCAAACCTGCAGGTTATTGCTCTGCAGGAGAACAAGTTTTCTGGTGCAGTACCTGAAGGGTTCAGCAGTTTGATGAGTTTGCAGTATGTGAATCTCAGCTCTAATGCATTTTCTGGGCATATTCCTGAGAACTATGGCTTTCTTAGATCCTTGGTTGTTCTTTCATTGTCTCATAATCACATTAGAGGAACAATTCCTTCTGAAATTGGAAACAGCTCTGATATAGAAATTCTTGAGCTTCGATCGAATTCATTGTCAGGTCGTATTCCTACTGATCTATCTCGCCTCACCCATTTGAAAGTGCTTGATTTGGGTGGTAACAATTTAACTGGGGATATGCCTGAGGAGATCTCCAAATGTCAGTCGTTAACTACGTTGTTAGTAGATCACAACCATCTTTCAGGTGCCATACCGGGGTCATTGTCGAATCTACCAAAGCTAGCAATGCTGGATCTGTCTACTAACAACTTGAGTGGGGAAATTCCTAGTAGTTTTTCTATGATCCCTGATTTGGTGTATTTCAACGTGTCAGGGAACAATTTGGAAGGTGAGATACCACAAACATTGGGATCTCGGTTCAACAACCCTTCTGTATTTTCTGATAATCAGGGTTTATGTGGAAAGCCATTGGAATCAAAGTGCGAGGGAGTAGACAACAATAGGGACAAAAAGAGGTTGATTGTGTTGATTATCATCATTGCAACAGGAGCTTGCATATTAGTCCTATTTTGCTGTTTTTACATCATCAGCTTATGGAGATGGCGCAAGAAGCTCAAAGAAAGGGTTTCCGGGGAGAAGAAAAGGAGTCCTGCAAGAGCAAGTTCAGGAGCAAGTGGAGGTCGTGGTAGCAGTGAAAATGGTGGCCCCAAACTCGTGATGTTCAACACCAAAATTACACTTGCGGAAACAATTGAAGCAACTCGACAGTTTGACGAAGAAAATGTACTAAGCAGAACAAGGTATGGATTAGTATTCAAGGCCTGTTACAATGATGGAATGGTCCTTTCCATTCGCAGACTCCCTGATGGATCATTGGACGAGAACATGTACCGAAAAGAAGCTGAGTCGCTAGGAAAAATAAAGCACAGAAATTTAACTGTTCTCAGAGGTTATTATGCAGGACCACCAGATATGCGACTCTTGGCCTATGATTACATGCCCAACGGAAACCTTGCAACTCTCCTCCAAGAAGCTTCTCACCAAGATGGTCATGTTCTAAATTGGCCAATGCGACACCTCATTGCACTAGGAATTGCCCGTGGATTAGCCTTCATTCACCAATCCTCAATGGTCCATGGCGACGTGAAACCCCAAAATGTTCTATTCGACGCAGATTTCGAGGCCCATTTATCAGATTTCGGGTTAGATCGACTAACAATAGCCACTCAAGGAGAAGCAGCCTCCAGTTCAACTTCAGTTGGCACTTTAGGTTACGTTTCGCCAGAAGCAATCTTAACCAGCGAAGTCACGAAAGAGTCTGATGTTTACAGCTTTGGCATTGTGTTGTTGGAACTCCTAACAGGAAAGAGACCAGTAATGTTCACCCAGGACGAAGACATAGTGAAGTGGGTGAAAAAACAACTTCAGAGAGGTCAAATAACTGAGCTATTAGAACCTGGTTTACTTGAGTTGGACCCAGAATCATCAGAATGGGAAGAGTTTTTACTAGGTGTGAAAGTTGGATTGCTTTGCACGGCACCAGACCCTCTTGATCGACCAACGATGTCCGACATTGTTTTCATGCTCGAAGGTTGTCGTGTTGGTCCTGATATCCCATCCTCCGCGGATCCTACCTCTCAACATTCTCCGGCATAA 3393 0.4459 MHAFLLILLLCAPFLSYADRSAITVTEIQALTSFKLNLHDPLGALDGWDTSSPEAPCDWRGVACNNDRVTELRLPRLQLGGRLSERLSELRMLRKISLRSNFFNGSIPSSLMKCKLLRFLFLQDNAFSGNVPPEIGNLTGLQILNVAQNNLSGTVPRELPLSLKYLDLSSNAFSGEIPGTVANLSHLQLINLSYNEFSGEIPVMFGELQKLQYLWLDHNFLGGTLPSALANCSSLVHLSAEGNALGGVLPSAITALPNLQVISLSQNNLTGSIPASVFCNVSFHAPSLRIVQLGFNFFTGFVELETSTCFSLLQVLDIQHNSIRGTFPLWLANIATLSVLDLSCNALSGEVPSYIGNLAALKELKMANNSFTGVIPVEIKKCGSLGVVDLEGNNFAGEVPSFFGDMKGLKVLSLGENSFVGSVPVSFGNLSLLETLSLRSSRLNGTMPEMIMRLSNLTTLDLSDNKFTGEIYDSIGNLNRLIVLNLSGNGFSGKIPSSLGNLFRLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKFSGAVPEGFSSLMSLQYVNLSSNAFSGHIPENYGFLRSLVVLSLSHNHIRGTIPSEIGNSSDIEILELRSNSLSGRIPTDLSRLTHLKVLDLGGNNLTGDMPEEISKCQSLTTLLVDHNHLSGAIPGSLSNLPKLAMLDLSTNNLSGEIPSSFSMIPDLVYFNVSGNNLEGEIPQTLGSRFNNPSVFSDNQGLCGKPLESKCEGVDNNRDKKRLIVLIIIIATGACILVLFCCFYIISLWRWRKKLKERVSGEKKRSPARASSGASGGRGSSENGGPKLVMFNTKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPDGSLDENMYRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSSMVHGDVKPQNVLFDADFEAHLSDFGLDRLTIATQGEAASSSTSVGTLGYVSPEAILTSEVTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQHSPA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02946 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Vivi2g02946 1130 Gene3D Ribonuclease Inhibitor 24 160 IPR032675 -
Vivi2g02946 1130 FunFam Piriformospora indica-insensitive protein 2 351 449 - -
Vivi2g02946 1130 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 460 744 - -
Vivi2g02946 1130 MobiDBLite consensus disorder prediction 791 816 - -
Vivi2g02946 1130 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1116 - -
Vivi2g02946 1130 Gene3D Ribonuclease Inhibitor 306 382 IPR032675 -
Vivi2g02946 1130 Gene3D Ribonuclease Inhibitor 383 452 IPR032675 -
Vivi2g02946 1130 Gene3D Transferase(Phosphotransferase) domain 1 912 1116 - -
Vivi2g02946 1130 SUPERFAMILY RNI-like 363 724 - -
Vivi2g02946 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 347 1108 - -
Vivi2g02946 1130 FunFam Leucine-rich repeat receptor protein kinase EMS1 201 305 - -
Vivi2g02946 1130 Pfam Protein kinase domain 846 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g02946 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 183 - -
Vivi2g02946 1130 SUPERFAMILY Protein kinase-like (PK-like) 815 1117 IPR011009 -
Vivi2g02946 1130 SMART LRR_sd22_2 574 597 - -
Vivi2g02946 1130 SMART LRR_sd22_2 256 283 - -
Vivi2g02946 1130 SMART LRR_sd22_2 160 186 - -
Vivi2g02946 1130 SMART LRR_sd22_2 208 234 - -
Vivi2g02946 1130 SMART LRR_sd22_2 622 645 - -
Vivi2g02946 1130 SMART LRR_sd22_2 454 480 - -
Vivi2g02946 1130 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vivi2g02946 1130 Gene3D Ribonuclease Inhibitor 161 305 IPR032675 -
Vivi2g02946 1130 Gene3D Ribonuclease Inhibitor 453 743 IPR032675 -
Vivi2g02946 1130 ProSiteProfiles Protein kinase domain profile. 836 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g02946 1130 SMART serkin_6 836 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g02946 1130 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Vivi2g02946 1130 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Vivi2g02946 1130 Pfam Leucine rich repeat 162 219 IPR001611 GO:0005515
Vivi2g02946 1130 Pfam Leucine rich repeat 433 490 IPR001611 GO:0005515
Vivi2g02946 1130 Pfam Leucine rich repeat 575 635 IPR001611 GO:0005515
Vivi2g02946 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 911 - -
Vivi2g02946 1130 Gene3D Phosphorylase Kinase; domain 1 810 911 - -
Vivi2g02946 1130 SUPERFAMILY L domain-like 25 330 - -
Vivi2g02946 1130 SMART LRR_typ_2 208 232 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 256 280 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 138 162 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 478 502 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 574 598 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 526 549 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 406 429 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 622 646 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 454 474 IPR003591 -
Vivi2g02946 1130 SMART LRR_typ_2 670 693 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02946 Vivi-Chr2 127676470 127680297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02946 4 1130 Receptor kinase-like Gene Family AT4G36180 68.426 0.0 1495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vivi2g02946 Pkinase 1.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02946 - - gmx:100795838 1806.96