Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02939 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCAGCCGCCATCGTTTTCTGTGCTGCTGATGAAGCTGCACTCTGTCGTGCTTGTGATGAAAAGGTTCATATGTGCAATAAGTTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCAAGTGATGTACCGCGCTGCGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGCGATATGATAGTTCATGTTGGCGGTAAAAGAACACATGGACGATATCTTCTCTTTAGGCAAAGAGTTGAGTTCCCAGGTGATAAACCTAGTAATGCCGAGAATCCATCTTCGCAACCTTTGGATCCAGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAACAAAAGATGGGAGAGAAGCAACAGAATCATAGGGTGCCTCCCGTTCCAAGTTTAGAACCTAATGCCGATGGGAATACCAAGATGGATAATAAATTGATTGATTTGAACATGAAGCCTAATAGAATACATGATCATGCATCAAATCACCAGCCATAG 555 0.4306 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNAENPSSQPLDPGDIKRGQSPLPKQKMGEKQQNHRVPPVPSLEPNADGNTKMDNKLIDLNMKPNRIHDHASNHQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02939 184 Gene3D Classic Zinc Finger 2 91 - -
Vivi2g02939 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vivi2g02939 184 MobiDBLite consensus disorder prediction 167 184 - -
Vivi2g02939 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vivi2g02939 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vivi2g02939 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi2g02939 184 FunFam B-box zinc finger protein 19 2 92 - -
Vivi2g02939 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Vivi2g02939 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Vivi2g02939 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Vivi2g02939 184 CDD Bbox1_BBX-like 56 96 - -
Vivi2g02939 184 MobiDBLite consensus disorder prediction 104 184 - -
Vivi2g02939 184 CDD Bbox1_BBX-like 4 47 - -
Vivi2g02939 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02939 Vivi-Chr2 127497648 127500047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02939 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.388 4.01e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vivi2g02939 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02939 - - gmx:100780544 347.821