Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02931 ATGGAGGAAGTGAAGACGGAAACACCTGCGACGGCGACGGTGACGGAGGTGAAGGTAGTGGAAGCTCCGACGAAGGTTGTTGCCGATGTTAAGATGACAGAGAGAGACGGTGGTTTTTCTGCGCGTAAAGTAGTGCTTGCGATTGCTGCCGCGGATAGTGATGTTTTGACGAAGAAGCGTGCTCGTCCGATTGTAGAAATTCCGAAGGCAGTACCTCCGCCGAAGCAGAAGCAAAAGCAGAAGATGATGAAGAAAGAAGATGAGGATGTTTGTTTTATATGCTTCGATGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGTTGTCCTAAAGCATATCATCCGGCATGTGTCAAGAGAGATGAGGCATTCTTCCGTTCAAAAGCCAAATGGAATTGTGGTTGGCATATATGCAGTTCTTGTCAGAAAGCATCACATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGGGGTGTATACAAGATGCTGATTTTGTTTGTGTTAGAGGGAGTAAAGGTTTGTGTGGAATGTGCAAGAAAACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAGACCAGCTGGGAGTATCTTTTCAAGGTGTATTGGGTATATTTGAAAGCGGATTTATCTTTAACATTTGATGAGCTACTTCGTGCTAAAAACCCATTGAGAGATGCTGCTCCCGTGGTTCGAACTTCCCATGAACTTAATCATCTTAATAAAGACGACAAAGGATCTGGTTCTGACAACTCCTGCATAGACATAGAATCAAATAATTTGAAAAATAAGAAGCCTAAGGGACCTTCAGGTGGTGACGCGGGTGTGTCTCTGCCTGAATGTGCGAGTTGGGCATCAAAGGAGCTTCTGGAGTTTGTCTCTCATATGAGAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTACATAAAGAAGAACAATCTGCGTGATCCTCAACAGAAATCCCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTCTTGGCTACATTGAAATGCTAATGCTCCTTGAACCCCACTTCCTTGTAAAAGACAATACCCCTGCAGAAAATAATCTTGGAGCAGGAATTAGTGATGCTGTTGCTAATGAAAATGAGGCCATTGACAACTACAATAAACAGCCGATATTAGCTAATGATAAAAGAGGTTCAACAAGTAAAAGAGATGACTTGCCTGTGCCACAAAATAATCAAGATGCATATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGTCGAAGTCTGATGGAGAGTCTGATTGATGATACTGAAAGGATTCACGAGAAGATTGCTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGGCTTGTCCAAGTTGTAGGAATAAGCAAGGTTGCTGAACCGTACAAAATTGGCACTAGAACTACTGATATTAAGCTTGAAATTTTAAACTTAAATCGGAAAGAGGTCATATCCATAGATGAGATTTCGAATCAGGAGTTCTCTGAGGATGAAAGCAAGCGACTGCGTCAAAGTATAAAGTATGGGCTTTCAAAGAGATTGACCGTGGGAGAGATTCTGAACAAAGCGTTGACATTTCAAGAAATTAGAGTTAATGATTTGTTGGAAGCTGAGAAATTGCGGCTTAACAATCTGCGTGATAGAGCAAGCGAGAAGGGGCACAGAAAAGAGCTTAAAGAATGTGTGGAAAAGTTGCAGCAGCTAAATTCACTTGAGGAACGTCAGCGCAGGTTGCATGAAATCCCAGATGTACACTCTGACCCTAATTTGGATTCATTGTACGAGTCTGATGAAGATGCAGGAGAGTCAGATGGCAATAAACAAGATGGCAATATACCTATTTTTTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGCAGAACACGAGACTTGAGCACAGCCAGTGACTCGATTGGAAATGCATGCTTAGCAAAGAAGCATATTGAGCCTAACGAAACTGCTATTGATGATAGTGCTAATGTTGTAATAAAATCAGAAGTGTCTAGTCTTGCAGTTGACATTTCATCTCCACTTCTCTCTACAGGGATTGAGCAGCCATTTGATGATTTTATGAATGATAAAACATGGCATTATCAGGATCCATCTAGTAAGGTTCAAGGACCTTTTTCTATGTTGCAGTTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGTAAACTCTATATTGTTAAATGATGCACTTAATGGGAAATGTTCCAAAAATGTGCCATTGCAGCAGAGCAGCCTATCGCTCTCTTTAGGAGCCAGTGTTACATTGGGTGACACAGAAAGCAGTCAGGATGGTGGGAGGAATTCAATACAGAATGTAATTTCTGCTGCCAACGGAATCATAGAACATACAAGAGAACATAAAGTGGATGACACTTCTACCCAGTCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTTGCAACAACCAACTGTGTTTGCTGAGAATTTGAACGAGAATAGTACCAACAAGTTAAGTGAAAATCATGAGATTGAGAAAAACCCTGAAGATAATGGAAATCGTGGCTCGGACAGGACTTCTGGTGGTCAGAATCATCCGAAGCAATCAGACAGTGAAGACAACTCAGGACAATCTTCGGGACAAAGCTGGAGACACCTTGACGTAAATATTTCTTCCAATTGCTTGGACACCACATCTACTCATGTTTCTGAGACTACAACATCACCACTTAGACTGGGATTTGATTTGCACCGCCCCCCTTCCCCTTCAGCATGTAATACAATTACATGGCAGGCTATTATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTGGAGGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATTATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGCCCAATACTTGATGCAGGTAAGGGCGATGCATTGAGCTCCACATGTGATTTACAGTTACTATCTCAGTCCACAGTAGCAGAGGAGCCATTACAACAAGCAGATGTCCATCATCATCATCAAAGAATTTCAGGGGAGCTTTCCTCAAGAAATTCTAAAGTTGATGTGGGTTCAAACAACATTTGTGTTTCAAGTAATCAATGGGAGTCGGGCTCGGAAAATTCTTCTATTTTTCCATCCACTGAAACATTGGACATGACTGTAGATACCACTTGGAGACTTGGGTTGGAGAGTAGTACACAGTTGGGATGGGGAGGAATGGATCAACGAAATGCAAACACTGGCTGGGGAATAGGACAGGCGGCAGTGAACGCAAACAGAAGCTCAAATTCATGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAGACAAGATACGGAAGTGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCAGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGCAGAAATGCGTGGAACAGGCAACCAGTAGTCGGCGTTGGCAATGGAGGATCACACAGACCTCTGCCCAAAGGGCAACGGGTCTGTAAATTTTATGAAAATGGGTACTGTAGAAAGGGGGCATCCTGTCATTACTTCCACCCATGA 3765 0.4244 MEEVKTETPATATVTEVKVVEAPTKVVADVKMTERDGGFSARKVVLAIAAADSDVLTKKRARPIVEIPKAVPPPKQKQKQKMMKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIQDADFVCVRGSKGLCGMCKKTIMMIENSAQGNKEMCEVDFDDKTSWEYLFKVYWVYLKADLSLTFDELLRAKNPLRDAAPVVRTSHELNHLNKDDKGSGSDNSCIDIESNNLKNKKPKGPSGGDAGVSLPECASWASKELLEFVSHMRNGDTSLLSQFDVQNLLLEYIKKNNLRDPQQKSQIVCDSRLVNLFGKARLGYIEMLMLLEPHFLVKDNTPAENNLGAGISDAVANENEAIDNYNKQPILANDKRGSTSKRDDLPVPQNNQDAYAAINAHNINLIYLRRSLMESLIDDTERIHEKIAGSFVRIRISSGDQKQDMYRLVQVVGISKVAEPYKIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDESKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLEAEKLRLNNLRDRASEKGHRKELKECVEKLQQLNSLEERQRRLHEIPDVHSDPNLDSLYESDEDAGESDGNKQDGNIPIFSRIWDGVLNGVGGRTRDLSTASDSIGNACLAKKHIEPNETAIDDSANVVIKSEVSSLAVDISSPLLSTGIEQPFDDFMNDKTWHYQDPSSKVQGPFSMLQLYKWNASGHFPPDLRIWRIDEKQVNSILLNDALNGKCSKNVPLQQSSLSLSLGASVTLGDTESSQDGGRNSIQNVISAANGIIEHTREHKVDDTSTQSNGKDESVRSNGWHDQSHVHPLQQPTVFAENLNENSTNKLSENHEIEKNPEDNGNRGSDRTSGGQNHPKQSDSEDNSGQSSGQSWRHLDVNISSNCLDTTSTHVSETTTSPLRLGFDLHRPPSPSACNTITWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPILDAGKGDALSSTCDLQLLSQSTVAEEPLQQADVHHHHQRISGELSSRNSKVDVGSNNICVSSNQWESGSENSSIFPSTETLDMTVDTTWRLGLESSTQLGWGGMDQRNANTGWGIGQAAVNANRSSNSCTSVVTPSFGDSQTRYGSDRFSVPRDRGFPGHGREPGLVRGRNAWNRQPVVGVGNGGSHRPLPKGQRVCKFYENGYCRKGASCHYFHP 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02931 1254 Pfam Plus-3 domain 437 540 IPR004343 GO:0003677
Vivi2g02931 1254 MobiDBLite consensus disorder prediction 832 865 - -
Vivi2g02931 1254 FunFam Zinc finger CCCH domain-containing protein 19 433 562 - -
Vivi2g02931 1254 ProSiteProfiles SWIB/MDM2 domain profile. 289 372 IPR003121 -
Vivi2g02931 1254 Pfam SWIB/MDM2 domain 297 370 IPR003121 -
Vivi2g02931 1254 SMART rtf1 432 542 IPR004343 GO:0003677
Vivi2g02931 1254 SMART swib_2 297 375 IPR019835 -
Vivi2g02931 1254 Gene3D - 731 787 IPR035445 -
Vivi2g02931 1254 Coils Coil 875 895 - -
Vivi2g02931 1254 SMART gyf_5 730 785 IPR003169 GO:0005515
Vivi2g02931 1254 Coils Coil 566 586 - -
Vivi2g02931 1254 Gene3D SWIB/MDM2 domain 288 378 IPR036885 -
Vivi2g02931 1254 MobiDBLite consensus disorder prediction 886 901 - -
Vivi2g02931 1254 MobiDBLite consensus disorder prediction 832 859 - -
Vivi2g02931 1254 SUPERFAMILY SWIB/MDM2 domain 295 371 IPR036885 -
Vivi2g02931 1254 CDD GYF 729 784 IPR003169 GO:0005515
Vivi2g02931 1254 CDD SWIB-MDM2_like 295 370 - -
Vivi2g02931 1254 SUPERFAMILY FYVE/PHD zinc finger 77 135 IPR011011 -
Vivi2g02931 1254 Gene3D - 433 562 IPR036128 GO:0003677
Vivi2g02931 1254 ProSitePatterns Zinc finger PHD-type signature. 91 151 IPR019786 -
Vivi2g02931 1254 ProSiteProfiles Plus3 domain profile. 432 565 IPR004343 GO:0003677
Vivi2g02931 1254 ProSiteProfiles GYF domain profile. 729 783 IPR003169 GO:0005515
Vivi2g02931 1254 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 972 1254 - -
Vivi2g02931 1254 SUPERFAMILY Plus3-like 433 562 IPR036128 GO:0003677
Vivi2g02931 1254 SMART PHD_3 90 136 IPR001965 -
Vivi2g02931 1254 Pfam GYF domain 732 775 IPR003169 GO:0005515
Vivi2g02931 1254 CDD PHD5_NSD 90 135 - -
Vivi2g02931 1254 SUPERFAMILY CCCH zinc finger 1229 1253 IPR036855 GO:0046872
Vivi2g02931 1254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 180 IPR013083 -
Vivi2g02931 1254 ProSiteProfiles Zinc finger PHD-type profile. 88 154 IPR019787 -
Vivi2g02931 1254 MobiDBLite consensus disorder prediction 884 930 - -
Vivi2g02931 1254 FunFam Zinc finger CCCH domain-containing protein 19 77 180 - -
Vivi2g02931 1254 ProSiteProfiles Zinc finger C3H1-type profile. 1229 1254 IPR000571 GO:0046872
Vivi2g02931 1254 Coils Coil 588 609 - -
Vivi2g02931 1254 MobiDBLite consensus disorder prediction 613 646 - -
Vivi2g02931 1254 MobiDBLite consensus disorder prediction 902 930 - -
Vivi2g02931 1254 SUPERFAMILY GYF domain 728 782 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02931 Vivi-Chr2 127340776 127347363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02931 87 176 PHD Transcription Factor Family AT5G36670 30.693 2.08e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vivi2g02931 Plus-3 7.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02931 - - aprc:113869503 1801.18