Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g02880 | ATGACACTCAAAGCCTTTGTATCACTTATCTTCAATTTTATTGGCCTAGAAGAAGCACACACAAACAATGATGCAACTTTACCATACCTTGTTGCCACTACATCAATTCTCCCAAACAAAATCAACCAACAATCATCAGAATCTTCAACAACAAAAACAACAACATCCAATGATGTTGGATTGTGTTGTGTGTGCTTGTCTATGTTAAACAACAAAGATGAAATTCGTGTGCTTCCTTGTTCGCACGAATTTCATAAGGTTTGTGTGAATAGTTGGCTAAAGGGTCATCATAAAACATGTCCATTGTGTCGGTTTCCAATGGGAGCTGAAGAAAAGTCTCATCGTGCTGAAATGTTTTCTGAAGAGATGCTAATATGGTTTTCTTCTTTTCATATAGCTGGTATGTAA | 408 | 0.3652 | MTLKAFVSLIFNFIGLEEAHTNNDATLPYLVATTSILPNKINQQSSESSTTKTTTSNDVGLCCVCLSMLNNKDEIRVLPCSHEFHKVCVNSWLKGHHKTCPLCRFPMGAEEKSHRAEMFSEEMLIWFSSFHIAGM | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g02880 | 135 | Pfam | Ring finger domain | 62 | 104 | IPR001841 | - | |
| Vivi2g02880 | 135 | PANTHER | TARGET OF ERK KINASE MPK-1 | 37 | 112 | - | - | |
| Vivi2g02880 | 135 | SMART | ring_2 | 62 | 103 | IPR001841 | - | |
| Vivi2g02880 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 109 | IPR013083 | - | |
| Vivi2g02880 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 62 | 104 | IPR001841 | - | |
| Vivi2g02880 | 135 | SUPERFAMILY | RING/U-box | 61 | 108 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g02880 | Vivi-Chr2 | 125693071 | 125693767 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi2g02880 | 54 | 104 | C3H Transcription Factor Family | AT5G45290 | 51.923 | 1.78e-13 | 64.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g02880 | - | - | vvo:131652018 | 270.781 |