Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02867 ATGGATTTCGTGCAAAATCCTTGTCCTTCTCGTTCGTCTTTGTTCGGTTCCTTCGGGAATTTCGTTGACAAGGTTAAAGAAATGGGTACTCTTGCTGTTTCCGCTATCATTGGGAACATTTTCTCGGCGATCTTGACCTTTTGTTTTGCATTAGTGGGGACGTTGTTGGGTGCTATGACAGGAGCTTTGATAGGTCAAGAGACAGAAAGTGGTTTCATTCGAGGTGCGGCGGTTGGTGCTATATCAGGAGCTGTTTTTTCGATTGAAGTGTTTGAATCATCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATATTTGATTGATGTTATAGCTAGTTTGTTGAGTGGAAGACTCGTGCGTGAGAGGATTGGTCCTGCAATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACCTCTTCGACATTGGTGGTTCAAAAGGTTTATCCGGAGATTCCGTTGCGAAAATCCCAAAAATCAAAATCACCACTGACAATGTCGATGCGTCAGGGGAGAAAGTTTCTTGTTCAGTTTGTCTCCAGGACTTTCAGCTCGGCGAGACGGTTAGAAGTTTACCTCATTGTCATCACATGTTTCATCTACCTTGCATAGATATGTGGCTCTTGAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 705 0.434 MDFVQNPCPSRSSLFGSFGNFVDKVKEMGTLAVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNLFDIGGSKGLSGDSVAKIPKIKITTDNVDASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02867 234 FunFam NEP1-interacting protein-like 1 150 234 - -
Vivi2g02867 234 SUPERFAMILY RING/U-box 182 234 - -
Vivi2g02867 234 CDD RING-H2_NIPL1-like 188 231 - -
Vivi2g02867 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Vivi2g02867 234 Pfam Ring finger domain 188 231 IPR001841 -
Vivi2g02867 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 234 IPR013083 -
Vivi2g02867 234 SMART ring_2 189 230 IPR001841 -
Vivi2g02867 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 233 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02867 Vivi-Chr2 125516136 125517915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02867 22 234 C3H Transcription Factor Family AT5G66070 77.465 2.64e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02867 - - lja:Lj2g3v1670720.1 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02867 2 125516136 125517915 Vivi1g03180 1 69488012 69489373 PCT