Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02847 ATGGCGGATTCTCCTGTAAGAAGGCTTTCAAGGTCCCCTTCTCCATGGAGGGGTCAATCAAGATCTAGGTCTAGGTCTCCGGCAAGGTCTCTTGAGAGGCACAGGCCCAGGTCTCGGTCTATCGAAATGCAAAGGCCTAGGTCTCGGTCAAGGTCTCTTGAAATGCAAAGGCCTGGGTCTCAATCAAGGCCTCTTGATATGCAGAGGCCTAGATCTCGGTCAAGGTCTCTTGAAAAGCCGAGGCTTAGGTCTCGGTCAAGATCTCCTGATATGCAAAGGCCTAGATCTCCCTCGCGAGGTCGTGGAAGATCAAGATCAAGAAGTCCTCCTGATAGGAATGGTGGGGATACACTCTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACTTAGAGGAACATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTTGTGGTGGAGCCCCGTACACGTATATCTCGTGGTTTTGCGTTTGTTACTATGGATTCTGTTGAGGATGCAAACCGCTGTATCAAGTACCTGAATCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCAAAGAGAAAGCGGCCAAGAACTCCCACACCCGGGCACTATCTTGGGCTGAAAAACACTAGAGAAATTGGATATCGTGATGATCGTGGAGGTGGAGGAAGGTATCGGGGTGGATATGGTCGTGATGATTATCCATATCGCCGGTCTCCAAGGCACTCACCATATCGAGGTGGCAGGGATTATTCACCACCAAGGCACTCTCCCTATGGTGGTGGAAGGTATAGGAGGGAGAGGTCTAGGTCACCTTATGCTCCATATGGCAGCCCAGATAGGAGGTATGCTCGGGGGCCTAGGTGA 870 0.5034 MADSPVRRLSRSPSPWRGQSRSRSRSPARSLERHRPRSRSIEMQRPRSRSRSLEMQRPGSQSRPLDMQRPRSRSRSLEKPRLRSRSRSPDMQRPRSPSRGRGRSRSRSPPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKYLNQSVLEGRYITVERSKRKRPRTPTPGHYLGLKNTREIGYRDDRGGGGRYRGGYGRDDYPYRRSPRHSPYRGGRDYSPPRHSPYGGGRYRRERSRSPYAPYGSPDRRYARGPR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02847 289 MobiDBLite consensus disorder prediction 211 250 - -
Vivi2g02847 289 MobiDBLite consensus disorder prediction 68 97 - -
Vivi2g02847 289 SUPERFAMILY RNA-binding domain, RBD 109 224 IPR035979 GO:0003676
Vivi2g02847 289 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 104 283 - -
Vivi2g02847 289 SMART rrm1_1 117 190 IPR000504 GO:0003723
Vivi2g02847 289 MobiDBLite consensus disorder prediction 53 67 - -
Vivi2g02847 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Vivi2g02847 289 MobiDBLite consensus disorder prediction 26 52 - -
Vivi2g02847 289 MobiDBLite consensus disorder prediction 192 289 - -
Vivi2g02847 289 MobiDBLite consensus disorder prediction 1 119 - -
Vivi2g02847 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 187 IPR000504 GO:0003723
Vivi2g02847 289 Gene3D - 12 201 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02847 Vivi-Chr2 124979382 124982118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02847 112 201 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 3.25e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02847 K12897 - gmx:100527350 272.322