Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02846 ATGGCGGATTCTCCTGTAAGAAGGCTTTCAAGGTCCCCTTCTCCATGGAGGGGTCAATCTAGATCTCGGTCAAGGTCTCTTGAAAAGCCGAGGCTTAGGTCTCGGTCAAGATCTCCTGATATGCAAAGGCCTAGATCTCCCTCGCGAGGTCGTGGAAGATCAAGATCAAGAAGTCCTCCTGATAGGAATGGTGGGGATACACTCTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACTTAGAGGAACATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTTGTGGTGGAGCCCCGTACACGTATATCTCGTGGTTTTGCGTTTGTTACTATGGATTCTGTTGAGGATGCAAACCGCTGTATCAAGTACCTGAATCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCAAAGAGAAAGCGGCCAAGAACTCCCACACCCGGGCACTATCTTGGGCTGAAAAACACTAGAGAAATTGGATATCGTGATGATCGTGGAGGTGGAGGAAGGTATCGGGGTGGATATGGTCGTGATGATTATCCATATCGCCGGTCTCCAAGGCACTCACCATATCGAGGTGGCAGGGATTATTCACCACCAAGGCACTCTCCCTATGGTGGTGGAAGGTATAGGAGGGAGAGGTCTAGGTCACCTTATGCTCCATATGGCAGCCCAGATAGGAGGTATGCTCGGGGGCCTAGGTGA 720 0.4972 MADSPVRRLSRSPSPWRGQSRSRSRSLEKPRLRSRSRSPDMQRPRSPSRGRGRSRSRSPPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKYLNQSVLEGRYITVERSKRKRPRTPTPGHYLGLKNTREIGYRDDRGGGGRYRGGYGRDDYPYRRSPRHSPYRGGRDYSPPRHSPYGGGRYRRERSRSPYAPYGSPDRRYARGPR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02846 239 MobiDBLite consensus disorder prediction 1 74 - -
Vivi2g02846 239 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 54 233 - -
Vivi2g02846 239 MobiDBLite consensus disorder prediction 161 200 - -
Vivi2g02846 239 Gene3D - 11 151 IPR012677 -
Vivi2g02846 239 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 150 - -
Vivi2g02846 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 137 IPR000504 GO:0003723
Vivi2g02846 239 CDD RRM_SF 68 140 - -
Vivi2g02846 239 SMART rrm1_1 67 140 IPR000504 GO:0003723
Vivi2g02846 239 MobiDBLite consensus disorder prediction 142 239 - -
Vivi2g02846 239 MobiDBLite consensus disorder prediction 22 47 - -
Vivi2g02846 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Vivi2g02846 239 SUPERFAMILY RNA-binding domain, RBD 63 174 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02846 Vivi-Chr2 124979382 124982119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02846 62 151 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 3.51e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02846 K12897 - gmx:100527350 285.804