Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02792 ATGGGAGGTGACGCTGCTGAGAGTGCGACGGAGCCACAAACCACCGACGGAGTTAAGATCAACATTCGTTGCTCCAATGGTTCCAAGTTTTTCGTTCATGTTAGCCTCGATTCCACCGTTCGTTCCTTCAAGGATGTCGTCGCTCAGAACTGCGATATCTCTGCTGACCAACAACGGTTGATTTATAAGGGCCGGATCCTCAAGGACGATCAAACCCTTCAAAGCTACGGTTTGGAGGCAGATCATACTGTTCATTTGGTCCGTGGTTTTGCGCCTGCCAATACAACTGGTGGGACTAATACCAGCGGTGCGAATACCACAACTACTAATGCTAGAGCTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGAGCTGGACTTGGAGCTTCACTGTTTCCAGGACTAGGTATCAATGGGATGGGTGGAGGTGGTGGTCTCAATAGCTTATTTGGAGCGGGACCTCCAGATCTTGATCAATTGCAGCAACCATTGATGTCAAATCCTAATTTAGTGAGAGAAATTATGAACTCGCCTGCCATGCAAAATTTATTAAATAACCCTGATATAGTGCGCAACCTTCTAATGAGTAACCCACAGATGCAAGAGCTAATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCAAGCACACTTCGCCAGACACTTGAGGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACGGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGGTTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGTAATACAGGAAATGACAGTACCAGAAATTTGGGGACTCAAGGTGGCCAAACAAGGAATCAATCGACCAATCCCTCAACTACCAGTGCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTGCTGCAACTGGAGGTGCCCAAAGTAACGTCAGGAGGTCAACTACTGGTGTGGAAGCTCGGCAGCAGACACCCACTGGCTTAGGTGGGCTTGGTATACCAGATCTTGAAGGCATGTTGGGTGGTATGCCAGATTCCGGTTCATTGTCCCAATTTATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAATACTGATCAACGTGGGGTGCCTGATCTAAATTCAATGAGAGAGGTGATGCAAAACCCAGAGTTTCTTCGCATGTTTTCCTCACCCGAGACTATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAGCTTGGTCAGCAGCAATCAACACAGGAACCAGGTCAAACAGGTGGAGCCACCGGACCAGCGAACAATGTGGGGCTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCCAACAGATCAAATGAGCCACCAGAACAATTGTATGCTACCCAACTCTCTCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAAAACATAAGGGCTCTCATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCCGGACAGTAG 1629 0.4721 MGGDAAESATEPQTTDGVKINIRCSNGSKFFVHVSLDSTVRSFKDVVAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPANTTGGTNTSGANTTTTNARAAGANEGGGLGGAGLGASLFPGLGINGMGGGGGLNSLFGAGPPDLDQLQQPLMSNPNLVREIMNSPAMQNLLNNPDIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDSTRNLGTQGGQTRNQSTNPSTTSAEATSPVPNTNPLPNPWSSAAATGGAQSNVRRSTTGVEARQQTPTGLGGLGIPDLEGMLGGMPDSGSLSQFMQNPAISQMMQSILSNPQTMNQILGMNTDQRGVPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGATGPANNVGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02792 542 CDD Ubl_Dsk2p_like 18 90 - -
Vivi2g02792 542 Pfam Ubiquitin family 20 87 IPR000626 GO:0005515
Vivi2g02792 542 MobiDBLite consensus disorder prediction 272 346 - -
Vivi2g02792 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Vivi2g02792 542 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Vivi2g02792 542 SMART CBM 143 184 IPR006636 -
Vivi2g02792 542 SMART CBM 401 436 IPR006636 -
Vivi2g02792 542 SMART CBM 197 236 IPR006636 -
Vivi2g02792 542 SMART CBM 347 398 IPR006636 -
Vivi2g02792 542 PANTHER UBIQUILIN 13 537 IPR015496 -
Vivi2g02792 542 MobiDBLite consensus disorder prediction 272 364 - -
Vivi2g02792 542 CDD UBA_PLICs 500 538 - -
Vivi2g02792 542 Gene3D - 6 103 - -
Vivi2g02792 542 Gene3D - 482 542 - -
Vivi2g02792 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Vivi2g02792 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Vivi2g02792 542 SUPERFAMILY Ubiquitin-like 13 103 IPR029071 -
Vivi2g02792 542 FunFam Ubiquitin domain-containing protein DSK2b 194 250 - -
Vivi2g02792 542 MobiDBLite consensus disorder prediction 446 467 - -
Vivi2g02792 542 SMART uba_6 500 538 IPR015940 -
Vivi2g02792 542 Gene3D - 192 250 - -
Vivi2g02792 542 SMART ubq_7 18 89 IPR000626 GO:0005515
Vivi2g02792 542 MobiDBLite consensus disorder prediction 446 465 - -
Vivi2g02792 542 FunFam Ubiquitin domain-containing protein DSK2b 483 541 - -
Vivi2g02792 542 FunFam Ubiquitin domain-containing protein DSK2b 15 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02792 Vivi-Chr2 123752748 123758260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02792 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 3.88e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02792 K04523 - gmx:100797539 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02792 2 123752748 123758260 Vivi2g02792 2 123752748 123758260 ECH
Vivi2g02792 2 123752748 123758260 Vivi1g03226 1 70155098 70160696 PCT