Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02784 ATGGGTGTCTGTTTCGGATCACTCTCTCGCCTACCGCCACCCTCTTCCCTCAACATCCTTCACACTTCAGGAGGTAAAGTTTGGGAGATGGGAAGTAGTGAAAGTGGAAAGCTTCTAGAGATGTCAAACTTGAAGGTGTTTAGCTATGGAGATTTGAAAATTGCAACAAAGAGTTTCAAGTCAGATGCTTTGCTTGGAGAAGGTGGTTTTGGTAAAGTGTATAAAGGTTGGTTAAATGCTGAAACACTTGCTCCTGCTAAAGCTGGTTCTGGAATGATGGTGGCTATCAAGAAATTGAAACCTGATAGTTTGCAAGGTGTTCAAGAATGGCAGACAGAAATCAACTTTTTAGGAAGGATTTCTCATCCCAACTTGGTCAAGCTACTTGGTTATTGTAGGGATGACGATGAATTTCTACTTGTGTATGAGTTTATGCCAAGGGGAAGCTTGGAGAACCATCTATTTAGAAGAAATACTAACAGAGAGCCACTTTCTTGGAATACTCGACTCGAAATAGCTATTGATGCAGCTAGAGGTTTGGCTTTCTTGCATTCTTCAGAAAAACAAGTCATATATAGAGATTTTAAGGCTTCTAATATACTTCTTGATGGGAATTACAATGCAAAGATTTCAGATTTTGGGTTGGCTAAATTTGGACCATCAGAGGGAGATACACACGTGAGTACTAGGATCATGGGTACACATGGTTATGCTGCCCCAGAATATATTGCAACAGGTCATTTGTATGTGAAGAGTGATGTTTATGGATTTGGTGTAGTGCTACTTGAAATGTTGACAGGATTGCAAGCACATGATTCAAAAAGGCCTTCAGAGCAGCAGAATCTGGTTGAATGGATTAAACCTTCTCTAAGAGATAAAAGAAAGTTGATAAGTAGCATATTGGATAGTAGGCTAGAAAGCCAATGTTCACCAAAGGCAGCGTTAGAAACAGCTAAGCTTATTCTTAAATGCCTTGAACATGACCCTAAAAAACGTCCTTCTATGAAAGATGTTTTGGAGACATTGGAAGGCATAAAAGCTATTAAGGATAGAAGGAAGATATCCAAGAATCACGGCACTAAATCTGCAGCTAATAGCTATGTATAA 1107 0.3939 MGVCFGSLSRLPPPSSLNILHTSGGKVWEMGSSESGKLLEMSNLKVFSYGDLKIATKSFKSDALLGEGGFGKVYKGWLNAETLAPAKAGSGMMVAIKKLKPDSLQGVQEWQTEINFLGRISHPNLVKLLGYCRDDDEFLLVYEFMPRGSLENHLFRRNTNREPLSWNTRLEIAIDAARGLAFLHSSEKQVIYRDFKASNILLDGNYNAKISDFGLAKFGPSEGDTHVSTRIMGTHGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLQAHDSKRPSEQQNLVEWIKPSLRDKRKLISSILDSRLESQCSPKAALETAKLILKCLEHDPKKRPSMKDVLETLEGIKAIKDRRKISKNHGTKSAANSYV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02784 368 Gene3D Phosphorylase Kinase; domain 1 30 144 - -
Vivi2g02784 368 FunFam Serine/threonine-protein kinase BIK1 28 144 - -
Vivi2g02784 368 Pfam Protein tyrosine and serine/threonine kinase 62 342 IPR001245 GO:0004672|GO:0006468
Vivi2g02784 368 ProSitePatterns Protein kinases ATP-binding region signature. 65 98 IPR017441 GO:0005524
Vivi2g02784 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vivi2g02784 368 FunFam Serine/threonine-protein kinase PBS1 145 361 - -
Vivi2g02784 368 ProSiteProfiles Protein kinase domain profile. 59 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g02784 368 PANTHER OS01G0588500 PROTEIN-RELATED 37 345 - -
Vivi2g02784 368 SUPERFAMILY Protein kinase-like (PK-like) 35 347 IPR011009 -
Vivi2g02784 368 Gene3D Transferase(Phosphotransferase) domain 1 145 366 - -
Vivi2g02784 368 CDD STKc_IRAK 65 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02784 Vivi-Chr2 123593791 123595685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02784 36 365 Receptor kinase-like Gene Family AT4G02010 47.147 6.85e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi2g02784 PK_Tyr_Ser-Thr 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02784 - - gmx:100777578 506.138