Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02771 ATGCCTAAGGCCACCTCCACCGCGAAACCCGCTGATAACCTGTTGAAGCGCAAGGGCGCTGGTGCTGGAACTAAGCAATCGAAGAAAGCTGCGAAGGATCCTAACATGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAATTCAGAGAGACTTTCAAGAAGGAGAATCCTGACAACAAATCTGTTGCCGTGGTTGGTAAGGCTGGAGGGAAAGAGTGGAAAGCACTGTCTGAAGCTGAGAAAGCTCCTTATGTTGCTACCGCAGAGAAGAAGAAGGAGGAGTATGCCAAGGCTATGCGTGCATACAACATTTCGTTGACTGAGGAAAAGGCTCCGTCCGAGGAAGAGGGATCTGACAAGTCCAAGTCTGAAGTCAATGATGATGAAGATGATGACGAGGAATCTGACGAGTAG 423 0.4894 MPKATSTAKPADNLLKRKGAGAGTKQSKKAAKDPNMPKRPPSAFFVFMSEFRETFKKENPDNKSVAVVGKAGGKEWKALSEAEKAPYVATAEKKKEEYAKAMRAYNISLTEEKAPSEEEGSDKSKSEVNDDEDDDEESDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02771 140 MobiDBLite consensus disorder prediction 1 42 - -
Vivi2g02771 140 CDD HMG-box_AtHMGB1-like 38 98 - -
Vivi2g02771 140 SMART hmgende2 36 107 IPR009071 -
Vivi2g02771 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 138 IPR031061 -
Vivi2g02771 140 SUPERFAMILY HMG-box 25 108 IPR036910 -
Vivi2g02771 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Vivi2g02771 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Vivi2g02771 140 MobiDBLite consensus disorder prediction 112 127 - -
Vivi2g02771 140 Gene3D High mobility group box domain 21 128 IPR036910 -
Vivi2g02771 140 MobiDBLite consensus disorder prediction 107 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02771 Vivi-Chr2 123143178 123144556 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi2g02771 HMG_box 1.8e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02771 K25507 - gmx:100499992 171.4