Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02752 ATGGTTAAAGTTTGGTTATTGGCTCTAATGATTCTCTACAATGGCTTCTCTTTAAGTGTGTTTGGTATTCATAATTCAACAAGACCTGAATTTGTACATATTGGAGCTCTCTTCTCTTTCAATACTAGTGTTGGTAAGATTATCAAAATCGCGATTGAATCGGCTGTTGAAGATGTAAATTCAGATCCAAATATTCTCGGCGAGACCAAGTTGAAGCTCTCTCTTCAAGAAGATTCTAAATATAGAGGCTTTCTTAGCATTGCTGAGGTTTTGCAGGTCATGGCTAGACACAATGTGGCAATAATTGGTCCTCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCGAACGAGCTTCAAGTTCCTCTTCTCTCATTTTCAGCTTTAGACCCTACGCTTTCTTCGCTTCAATTTCCATTCTTTATTAGAACATGTCACAGTGATCTTTTTCAAATGGCGGCAATAGCAGACCTTGTTGATTACTATGGATGGAAAGAAGTCATTGCTGTGTATATAGATGATGACAATGGAAGGAACGGAATCGTTGCATTAGGCGATAAGCTTGCTGAGAGACGCTGCAGGATCTCATATAAAGCACCTGTGAGCCCCGAAGCAACTCCGGAGGAGATTACGAATGTGCTTGTTCAGGTGGCTCTTGCAGAATCAAGAATTATTGTTGTTCATGCTAACACTCTTTGGGGTCCGAAAGTGTTTAGTGTTGCAAAGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCAGCTATTCTTGATATAAGTAGTCCTTTATCTTCTGATAAAATGGATGAAATCCAAGGAGTGTTGACAACGCGCGTGTACACGCCGGATTCGGAGCTTAAAAGAAGGTTTGCTTCGAAATGGAAAAACTTGACTCGCGGAAATACTGCTAATGGCCCTCTTGGACTTAGTTTTTTGTCTCTCTATGCATATGATACTATTTATGCTCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACAAAATCACCTTCACAAATGATTCAAAACTACTTTCACTGCATGGTGACAGCTTGAATCTCGAAGCGTTGAACGTCTTCAATGAAGGAAACTTGTTACGTAAAAACTTTTATGGGGTTAACATGACAGGTGTGACAGGCTTGTTCAAATATGCACCTGATGGAAACCTTGTTAATCCCGCATATGAAATCATCAATGTGATTGGAACCGGGTCACGGAGGATTGGTTATTGGTCTAATCATTCTGGATTATCGGCCGTTCCTCCAGAAACAAATCATTCCAAACCGGGCAACGATTTCAGGGAAAGCAAAAAGCTACTCCCTGTGATTTGGCCTGGCGACATATACCAGAAGCCTCGCGGTTGGGTTTTTCCGAACAACGGAAGGCTATTAAGAATTGGAGTACCGAAACGCGTTAGTTACCGCCAATTTTTGTCACAAGTACCAGGCACTGATACATTTCAAGGATTCTGCATTGATGTGTTTCTCTCTGCAGTTAACCTCTTGCCTTATGCTGTCCCTTATAAGTTCATTCCATATGGGGATGGCAAGACCAATCCTAGCAACACCGAGCTTGTCCGTTTAATAACAACCGGTGAATTCGACGGTGCCGTAGGTGACATTGCAATTACCACAGAAAGAACAAAAATGGTGGATTTTACTCAGCCATACGTCGAGTCTGGTTTAGTGGTAGTAGCACCTGTTAGGGGGTCTGAAACAAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGAATGTGGTTTGTCACTGCATTGTTTTTCATAATAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAGAAAACAATTGATTACTATTTGTTGGTTTAGCTTTTCAACAATGTTCTTTTCACATAGGGAAAATACAGTGAGCACGCTCGGTCGTTGCGTGCTACTTATATGGTTATTTGTAGTTCTCATAATTACTTCAAGTTACACAGCAAGTCTAACATCAATCCTCACTGTACAACAACTTTCTTCACCAATTAAGGGCATTGAAAGTTTAGTAAATATGAAAGAACCAATTGGTTACAGTCAAGGCTCATTTGCTAAAGATTATTTAATCCAAGAAATCGGTATTGATGAGTCTAGGCTTGTTCCTTTAACAACACCAGAACAAGTTACTAGAGCACTGACAAAAGGTCCTCAAGATGGTGGTGTTGCTGCTTATATCGATCAACGTGCCTATATCGATATATTCCTTTCAAGCCGATGTCAGTTTACTGTTGTAGGTCAAGAGTTCACCCGAAACGGTTGGGGATTTGCCTTTCCAAGAGACTCGCCATTAGCAGTTGACCTATCAACCGCCATTTTGCAAATGGTAGACAATGGAGACTTACAAAGAATCCATGACAAGTGGCTTTTGAGTAGAGCTTGTTTAACACAAGGTGCAAAGCTTGAAGTTGAAAGGCTCAAGCTAAAAAGCTTTTGGGGCCTCTATGTAATATGTGGATCAGCTTGTTTGCTTGCTCTACTCATATATTTCATACAGATAATAAGACAGTACTACAAGCACCACTCAGAAGAACATCATGATTCTCCTGACCAAAACTCTGGCTCGGGATCGACGTGTTTGAAGAGTTTCCTCACCTTTGTAGATGAAAAAGAAGAGACTGTTAAAAACCGTTCGAAGAGAAAGAAAATGGAGAGAATCTCGTATAGAAGTAGTGAGGGAGGATCAATCTCCATCAATTCTAATAAAGATTATGTTGCTCAGTCTTCTTCATGCATAGCTGATTCTGTTTCTAATGGTGGAAGTGAACAAGTATTTATCAAAGTAGTGTAA 2859 0.404 MVKVWLLALMILYNGFSLSVFGIHNSTRPEFVHIGALFSFNTSVGKIIKIAIESAVEDVNSDPNILGETKLKLSLQEDSKYRGFLSIAEVLQVMARHNVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLFQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIVALGDKLAERRCRISYKAPVSPEATPEEITNVLVQVALAESRIIVVHANTLWGPKVFSVAKNLGMMGTGYVWIATAFLSAILDISSPLSSDKMDEIQGVLTTRVYTPDSELKRRFASKWKNLTRGNTANGPLGLSFLSLYAYDTIYALAHALDAFFKQGNKITFTNDSKLLSLHGDSLNLEALNVFNEGNLLRKNFYGVNMTGVTGLFKYAPDGNLVNPAYEIINVIGTGSRRIGYWSNHSGLSAVPPETNHSKPGNDFRESKKLLPVIWPGDIYQKPRGWVFPNNGRLLRIGVPKRVSYRQFLSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKTNPSNTELVRLITTGEFDGAVGDIAITTERTKMVDFTQPYVESGLVVVAPVRGSETSALAFLAPFTPRMWFVTALFFIIVGTVVWILEHRVNDEFRGPPRKQLITICWFSFSTMFFSHRENTVSTLGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVNMKEPIGYSQGSFAKDYLIQEIGIDESRLVPLTTPEQVTRALTKGPQDGGVAAYIDQRAYIDIFLSSRCQFTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMVDNGDLQRIHDKWLLSRACLTQGAKLEVERLKLKSFWGLYVICGSACLLALLIYFIQIIRQYYKHHSEEHHDSPDQNSGSGSTCLKSFLTFVDEKEETVKNRSKRKKMERISYRSSEGGSISINSNKDYVAQSSSCIADSVSNGGSEQVFIKVV 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02752 952 Gene3D - 758 819 - -
Vivi2g02752 952 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Vivi2g02752 952 Gene3D - 584 710 - -
Vivi2g02752 952 FunFam Glutamate receptor 148 305 - -
Vivi2g02752 952 Pfam Bacterial extracellular solute-binding proteins, family 3 516 812 IPR001638 -
Vivi2g02752 952 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Vivi2g02752 952 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Vivi2g02752 952 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 875 IPR015683 -
Vivi2g02752 952 Gene3D - 148 425 - -
Vivi2g02752 952 FunFam Glutamate receptor 709 816 - -
Vivi2g02752 952 CDD GluR_Plant 472 812 - -
Vivi2g02752 952 PIRSF IGluLR_plant 1 938 IPR017103 -
Vivi2g02752 952 Gene3D - 50 400 - -
Vivi2g02752 952 FunFam Glutamate receptor 583 713 - -
Vivi2g02752 952 Gene3D - 467 583 - -
Vivi2g02752 952 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Vivi2g02752 952 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Vivi2g02752 952 FunFam Glutamate receptor 467 583 - -
Vivi2g02752 952 Pfam Receptor family ligand binding region 50 410 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02752 Vivi-Chr2 122754716 122758708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02752 5 914 Ion Channels AT3G51480 58.068 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02752 K05387 - gmx:100793320 1510.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02752 2 122754716 122758708 Vivi2g02752 2 122754716 122758708 ECH
Vivi1g03256 1 70786483 70790784 Vivi2g02752 2 122754716 122758708 ECH
Vivi2g02752 2 122754716 122758708 Vivi1g03256 1 70786483 70790784 PCT