Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02734 ATGACACGAGCGCTAAGAATCCTCACCGAAAACATCAACGCCGCAGTAACAGCTCCGCCGCCGGAGGCCGTGGCGTTGGAGTCAGACTTCGTTGTGATTCTCGCAGCCTTGCTCTGTGCCTTGATATGCGTTGTCGGACTCATCGCCGTAGCCCGATGCGCGTGGCTCCGACGAGACTCCGGCACCGGAAACTCACCTCAGCAAGCTTTAGCCAACAAGGGACTAAAGAAGAAGGTTCTTCAATCGCTTCCGAAGTTCGCTTACGTCGATAGCAACCCTACGAAATGGCTGGCAACAACGGAATGCGCGATTTGTCTCTCTGATTTCGCCGCCGGCGACGAGATCCGTGTACTACCGCAGTGTGGACACGGATTTCACGTTGCTTGCATAGACACATGGCTTGGGTCCCACTCTTCTTGCCCTTCATGTAGACAGATTCTGGCGGTGACAAGGTGTCAGAAGTGTGGCCGGTTTCCGGCGACCGGAGCTGAAGCTACCGCCGTAAACGTCAGTGAACTAGAATCGAAATCTGCAGAAGGTAGCAATGTTGGTGCAAATAGTAATAATAACTGTAACGGGGGTGTTAGTAGCAGTAGTAGTAATAATTCTGGAAATCACAGCCACAGTGTAAACAGTGGGTTCTTGCCTTAA 651 0.5223 MTRALRILTENINAAVTAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRDSGTGNSPQQALANKGLKKKVLQSLPKFAYVDSNPTKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAEATAVNVSELESKSAEGSNVGANSNNNCNGGVSSSSSNNSGNHSHSVNSGFLP 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02734 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 149 IPR013083 -
Vivi2g02734 216 Pfam Ring finger domain 101 144 IPR001841 -
Vivi2g02734 216 SUPERFAMILY RING/U-box 80 149 - -
Vivi2g02734 216 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 156 - -
Vivi2g02734 216 CDD RING-H2_EL5-like 101 144 - -
Vivi2g02734 216 MobiDBLite consensus disorder prediction 194 216 - -
Vivi2g02734 216 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vivi2g02734 216 SMART ring_2 102 143 IPR001841 -
Vivi2g02734 216 FunFam E3 ubiquitin-protein ligase ATL6 64 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02734 Vivi-Chr2 122607356 122608303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02734 1 155 C3H Transcription Factor Family AT1G76410 63.354 1.14e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02734 - - gmx:100787383 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02734 2 122607356 122608303 Vivi2g02734 2 122607356 122608303 ECH
Vivi2g02734 2 122607356 122608303 Vivi3g02500 3 41836751 41837721 ECH
Vivi2g02734 2 122607356 122608303 Vivi1g03262 1 70882562 70883523 PCT