Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02717 ATGAGTGATACAAAAGAAAGCGAGGAAGTTAGCCAGAGCATTCCTGTTAATACAGAGGAAGCTGGCCATGTCATTGGTGAAAATGGAAGTCCAAACCAAGCTTCAGCTAATCAATATTTAAGAGATGACCATCAGATGATTATAGATAATCTGGCTGGCCTGGATTCCTATCTTGATCGAGAGATGCATCTCGAAGTTCAACCTGATACTGCAGAAGAAACTTATGTGTCAGATGATAAATATGTGAGGGAAGAAATTCTTTCCGTGGATGAAAATGTGAAACCCAAGGTTGTTTTGGAAGACATCCCACGAGAGAATGTTCAAGACACTCTTCACTCAGTCCCAGTTGAGGTTGATGATCAGATTCTGAATACAACTGAGTGTGAAGCTGCTGCTTCTGATGGGAAGGTGGAAGCCGAAAGACTTCCTCAGAGTAGTAATGGCGTTGAGAATGATGATACTGCGTGTCGAAATAGTGTTAGTGATGGTGATGCTGAAACGACAGGGATGGAGGTTGATGTGAAGCCTGAAGTTTGTGAAGCGGCTGATAGTAAAACTTGTGATAATGAACTTATATCGTCAAGTCATGATAATCCGATGCCTTCTGCTGCAAATGAACCTATGCCGTCAAGTCATAATGATCATACTACACCACAACCTGCCCATGCTGAAACAGGGCCAGAAATCAAGAATGTTTTAGAAGTTGAAATTAGTAAGGCCGGTGAAGAGCAAGCTGGTGAGCATGCAGATAATGGGAACTCAGATTCGCCGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGATGGTAATGAGTCGGGAACTGAAGAGGACCAAGCAGTTTTTATGAAGGAGCTCGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTTTATGGGGAAGGACTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGATTGGGAGGCTATGAGAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCATAACATAAAAGGTGGCGAGCTGAATGTGCCTATCCCTTCTCCTCCAGAGCCTGTGATTATTGAAAATCAGGCTTTAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAACAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATTTGTTGTCTGTGCAAAAGCGAGAAAAGCAACTTAAGAATATCAATATACTTAAACGTAAGAAGCCATCTTATATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAACCACAGTTGGAAACAGCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAGTCAACGTACAAAAAACTAAAGATTGTTTCGAGGTATATGCTTTAGTTCCTGGCCTTTTGCGGGAAGAGGTCCGAGTGCAATCAGACCCAGCAGGACGTTTGGTCATAAGTGGTGAGCCAGAACATCTAAATAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGTTGCATGGACAATTGTTTGTTCGTGTCCCATTTGAACAGTCAGAATAG 1716 0.4312 MSDTKESEEVSQSIPVNTEEAGHVIGENGSPNQASANQYLRDDHQMIIDNLAGLDSYLDREMHLEVQPDTAEETYVSDDKYVREEILSVDENVKPKVVLEDIPRENVQDTLHSVPVEVDDQILNTTECEAAASDGKVEAERLPQSSNGVENDDTACRNSVSDGDAETTGMEVDVKPEVCEAADSKTCDNELISSSHDNPMPSAANEPMPSSHNDHTTPQPAHAETGPEIKNVLEVEISKAGEEQAGEHADNGNSDSPQNMFFLDADHYYDGNESGTEEDQAVFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIPSPPEPVIIENQALASGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNLLSVQKREKQLKNINILKRKKPSYMDNAVKAARSKPSKPQLETAVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02717 571 SUPERFAMILY HSP20-like chaperones 480 567 IPR008978 -
Vivi2g02717 571 SMART bright_3 278 369 IPR001606 GO:0003677
Vivi2g02717 571 SMART ARID_2 274 364 - -
Vivi2g02717 571 CDD ACD_sHsps_p23-like 490 566 - -
Vivi2g02717 571 Pfam ARID/BRIGHT DNA binding domain 282 364 IPR001606 GO:0003677
Vivi2g02717 571 MobiDBLite consensus disorder prediction 131 225 - -
Vivi2g02717 571 ProSiteProfiles ARID domain profile. 277 368 IPR001606 GO:0003677
Vivi2g02717 571 FunFam AT-rich interactive domain-containing protein 3 277 376 - -
Vivi2g02717 571 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 471 571 IPR002068 -
Vivi2g02717 571 MobiDBLite consensus disorder prediction 187 220 - -
Vivi2g02717 571 SUPERFAMILY ARID-like 270 376 IPR036431 GO:0003677
Vivi2g02717 571 MobiDBLite consensus disorder prediction 1 36 - -
Vivi2g02717 571 MobiDBLite consensus disorder prediction 168 184 - -
Vivi2g02717 571 FunFam AT-rich interactive domain-containing protein 3 463 571 - -
Vivi2g02717 571 MobiDBLite consensus disorder prediction 144 165 - -
Vivi2g02717 571 Pfam Hsp20/alpha crystallin family 488 570 IPR002068 -
Vivi2g02717 571 CDD ARID 279 364 - -
Vivi2g02717 571 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 146 570 IPR045147 GO:0006357
Vivi2g02717 571 Gene3D - 277 374 IPR036431 GO:0003677
Vivi2g02717 571 Gene3D - 470 571 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02717 Vivi-Chr2 121698804 121704525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02717 272 569 ARID Transcription Factor Family AT1G76510 64.026 5.75e-131 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi2g02717 HSP20 3.6e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02717 - - psat:127119953 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02717 2 121698804 121704525 Vivi2g02717 2 121698804 121704525 ECH