Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02677 ATGCCTCCAAATTTCATAGCACCAAAGCCTCAACAATACTTCAATACTACTACTCTCTCCTTGGAAGGATCACCACATATTGAACAATCATTACCAAAACTCATTATGCATCCCATAACTTTGAAGTTTGAGGATTTGGAGTACAAAGTGAAACTAAACCAAAAAGAGAAAACTATACTGAATGGAATCACAGGAGTGGTGTGTCCAGGAGAGATACTAGCTATGTTAGGCCCATCAGGCAGTGGCAAGACAACACTCCTTACGGCTCTCGGCGGGCGTCTCACCGGTAAACTATCAGGAAAAGTAACCTACAACAATCAATCTTTTTCAGGTTTGATAAAAAGAAGAACAGGTTTTGTTGCTCAAGATGATGTTCTTTACCCTCATCTAACCGTAACCGAAACACTAGTGTTCACTGCACTTTTGAGGCTTCCACAAACCTTAACAAGAGATGAAAAAGTAGAGCATGTGGAGAGAGTTATAACTGAGTTAGGACTGAATAACTGTAGGAATAGTATGATTGGAGGACCACTTTTGAGAGGTATATCAGGTGGTGAGAAAAGGAGAGTGAGTATAGGACAAGAAATGTTGATTAATCCGAGTTTGTTGTTGCTTGACGAACCTACTTCTGGTTTGGATTCTACCACAGCGTTGAGGATCTTGAACACTATCAAGAAACTTGCTAGTGGTGGTAGAACTGTTGTTACAACAATTCATCAACCTTCTAGTAGACTCTACTACATGTTTGATAAGGTTGTGCTGCTCTCAGAAGGTTGTCCTATATATTATGGTCCTGCTTCAACTGCGCTTGAGTATTTCTCGTCTGTTGGTTTTTCGTCTTGCGTGACTGTTAATCCTGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGGTCCGGAATCTAAGCATGTAACTGAACAAAGTGAGGCTTTGGAAAATGAGAGGAAGAATGTGAGAGAAACTCTTATTTCTGCTTATGACAGGAACTTAGCTTCAAAGCTGAAAGCTGAGGTTTGTAGCATGGAAGAGAATAACTTAGATGCTTGCACAAAGAATCAAATAAAACCAGAACAATGGTGTACAAGCTGGTGGTATCAGTTCACTGTATTATTGGAACGAGGAGTGAAGGAAAGAAGGCATGAAGCCTTCAATAAGCTCCGAATATTTCAAGTCGTAAGTGTAGCTTTTCTTGCTGGACTTTTGTGGTGGCATACACCTAAATCACACCTTGCAGATAGGATAGCTTTGCTCTTTTTCTTTGCTGTTTTCTGGGGGTTCTACCCTCTCTACAACGCGGTTTTCACATTTCCACAAGAGAGGAGAATGCTAATCAAAGAACGGTCATCAGGAATGTACCGTCTCTCATCGTACTTTCTAGCAAGAACAATAGGAGACTTACCTCTCGAACTCGCTCTTCCAACAGCCTTTGTGGTCATATTATACTGGATGGGAGGACTCAAACCTGATTTCATGACATTCATTCTATCACTTCTTGTTGTTCTTTACAGCGTCGTTGTATCGCAAAGTCTTGGATTAGCATTTGGCGCGATTTTGATGGATATCAAGCAGGCAACTACGCTAGCTTCAGTGACAACACTTGTGTTTCTCATTGCTGGAGGATACTATATACAACAGATTCCACCTTTCATTGTTTGGCTTAAGTACTTAAGCTATAGCTACTACTGTTACAAGCTTCTTCTCGGTGTTCAATACGGTGAAAATGATTATTATCAATGTCCTAATGGCGAGATGTGCAAGGTTCTCGACTTTCCTCCGATTAAATCCATGGGATTGAATCATATGTGGGTTGATGTGTCTGTCATGGCTTTGATGTTGGTTGGTTATAGACTTGTTGCTTATTTTGCACTTCATAGAGTTAGGTAA 1884 0.4066 MPPNFIAPKPQQYFNTTTLSLEGSPHIEQSLPKLIMHPITLKFEDLEYKVKLNQKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLTGKLSGKVTYNNQSFSGLIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPQTLTRDEKVEHVERVITELGLNNCRNSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKKLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALEYFSSVGFSSCVTVNPADLLLDLANGIGPESKHVTEQSEALENERKNVRETLISAYDRNLASKLKAEVCSMEENNLDACTKNQIKPEQWCTSWWYQFTVLLERGVKERRHEAFNKLRIFQVVSVAFLAGLLWWHTPKSHLADRIALLFFFAVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVVILYWMGGLKPDFMTFILSLLVVLYSVVVSQSLGLAFGAILMDIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYGENDYYQCPNGEMCKVLDFPPIKSMGLNHMWVDVSVMALMLVGYRLVAYFALHRVR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02677 627 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Vivi2g02677 627 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 619 - -
Vivi2g02677 627 CDD ABCG_EPDR 38 264 - -
Vivi2g02677 627 FunFam ABC transporter G family member 22 47 276 - -
Vivi2g02677 627 Gene3D - 39 276 IPR027417 -
Vivi2g02677 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 274 IPR027417 -
Vivi2g02677 627 Coils Coil 301 328 - -
Vivi2g02677 627 SMART AAA_5 69 259 IPR003593 GO:0016887
Vivi2g02677 627 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 282 IPR003439 GO:0005524
Vivi2g02677 627 Pfam ABC-2 type transporter 239 307 IPR043926 GO:0140359
Vivi2g02677 627 Pfam ABC-2 type transporter 365 571 IPR013525 GO:0016020|GO:0140359
Vivi2g02677 627 Pfam ABC transporter 61 210 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02677 Vivi-Chr2 120146839 120149463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02677 39 258 Calmodulin-binding Proteins AT2G36910 30.131 4.33e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02677 K05681 - gmx:100794774 1035.02