Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02610 ATGGGGTCTAGTAGTAGTAAAGGTGCTTCTTCTTGTAGTTCATCTTCTTCTTCTTGTAGTTTACGGAAGAATCGATCCAAGAGGCTTAGAGGTTTTCCTTCTTATTGTCTTGGAACAACTTCTGGATCTCGTGACAGTGATAATGATGAACGGGTTTGTGATCAGAGTAAAGTAAATGGAAGTGATGTTACATATACCAGCAGCAATGAAATTGACTCAGATGAATCGAAATCGGAGTCTTTTAGAAAAGTTAAACCGGATGAAATACCTTGTATGCCTTCTAACATTGATCTTGATGAGTGGAGTCGCACTGAATCCAGAACCGCGAGCATCTCGGCTCACGGTTCTTCAACTCAGTCTACAAATTCTGCGAGTCGGTTCCTTTCTCGGTTTAGCCTCATTCCGGGTAATATAAGCTTCAGACTCAGCAGAACCACGAGCTTAGGGTCATCTCGACCTTGTCCTGATTCTTCGGCAAGTCTTTCTATGTTTAACAATGATGAAGACGAGCTTAGTCTGCATAATAGAAATGAAACTCAACAATATAGTGGCAGCGACTTGCTTAACGGGTCTTTTGTAAATCCAGTCCCTATACAGCATCACGGAGATGCTTCTAATAATTCAAGTTCGAATGTCCCGATATTCGGTTTGGGTAGCAACTTATCGAGCAGTCCTACGTTGTCTCCTCTCGAAGATACGGTTAGAGATGGATATGACCCACGAGAGATGTCTGGTATGAACATGTTTTCTCCGAGAGTTAATACCGAGGCAGGAAATGTTACGGATAGACGGAATGGAGCTCGTGAACCTGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGCGTTGGGAGGCTTCGTGACAGAGTGCACCGCCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGATGCTAGCGAGGATAGTGGAAGACAAGTAGGGGAGAGGGGTGCAGGAGTGTCACCATCTGATCGAAACGCTTTAAATTCTCTTACTGCATCCGGTTATCCTCTGCCTAATAGGTCTAGCTCTCCATTCAGAACCCAAGACCACGAGGTTGAGGCTTCACGGTCAAGAGAAACTAGGTATCAGGATCTACTAGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTACATGCAGAATAAATAGTCGCGATAACAATTCAAATTCAAACGATGATACAAATGCTAGAGCTAGCATATCAAGAATAGTGATGTTAGCTGAAGCCTTATTCGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTATCTTCTATCGGATCTGTTCCCGCGCCTGCTGAAGTTGTCGAATCCTTACCTGTTAAACTATACACAAAGCCACACAAACATCAAGAAGAACCTGTACAATGCTATATATGTCTTGTGGAGTATGAAGATGGTGACAGCATGCGAGTACTTCCTTGCCATCATGAATTTCATACGACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTATGTCGAGGAGATATTTGTATATCAGATTCACTCCCAACAGAAAACTAA 1689 0.4358 MGSSSSKGASSCSSSSSSCSLRKNRSKRLRGFPSYCLGTTSGSRDSDNDERVCDQSKVNGSDVTYTSSNEIDSDESKSESFRKVKPDEIPCMPSNIDLDEWSRTESRTASISAHGSSTQSTNSASRFLSRFSLIPGNISFRLSRTTSLGSSRPCPDSSASLSMFNNDEDELSLHNRNETQQYSGSDLLNGSFVNPVPIQHHGDASNNSSSNVPIFGLGSNLSSSPTLSPLEDTVRDGYDPREMSGMNMFSPRVNTEAGNVTDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERDASEDSGRQVGERGAGVSPSDRNALNSLTASGYPLPNRSSSPFRTQDHEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRINSRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKPHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTEN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02610 562 FunFam Putative RING zinc finger domain superfamily protein 476 554 - -
Vivi2g02610 562 MobiDBLite consensus disorder prediction 57 71 - -
Vivi2g02610 562 ProSiteProfiles Zinc finger RING-type profile. 507 549 IPR001841 -
Vivi2g02610 562 MobiDBLite consensus disorder prediction 307 365 - -
Vivi2g02610 562 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g02610 562 MobiDBLite consensus disorder prediction 1 103 - -
Vivi2g02610 562 SUPERFAMILY RING/U-box 487 555 - -
Vivi2g02610 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 553 IPR013083 -
Vivi2g02610 562 Pfam Ring finger domain 506 549 IPR001841 -
Vivi2g02610 562 MobiDBLite consensus disorder prediction 243 266 - -
Vivi2g02610 562 SMART ring_2 507 548 IPR001841 -
Vivi2g02610 562 MobiDBLite consensus disorder prediction 328 351 - -
Vivi2g02610 562 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 561 - -
Vivi2g02610 562 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vivi2g02610 562 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02610 Vivi-Chr2 117648726 117653512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02610 224 556 C3H Transcription Factor Family AT5G45290 59.770 2.19e-117 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02610 - - gmx:100786091 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02610 2 117648726 117653512 Vivi2g02610 2 117648726 117653512 ECH