Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02583 ATGGAGAACTATGAGGTTCTAGAAGAGCTTCACAACGTCGAAGCCGAGATTGAAGATGTTCAAGAACAAATTAGGGCCTTAATTGAAAAGCAAGAGAGGTTGTATGAGAGGAAATCTGAGCTGAATTCTATTCTGGAAGCGTGTAAAGAATCTGAAAATGAGGTCAATAATGCAAGTTCGAGTACCGTGGAGAATTGGGATGGGCCGTTTGAATGGGATTCTGAAGCAGCTGATCTTAGATTGAACATTTTTGGCATTTCATCTTACCGTGCAAATCAAAAAGAGATTATTAATGCCATATTGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAATGGAGTTGCTCTAGTTGTCAGTCCTTTGCTTTCGCTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCGGCATATATGTTAACTTCAACAACAAGTAAGGAAAATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGTGAGGGGGAACTCAAAATTCTGTATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTCTTTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAATCTTGGTATTCTCAAGACACAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGGTAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACGGTCAATAGGCCAAATTTGTTTTATATGGTAAAGGAAAAGTCATCCGTCAGTAAGGTGGTTGTTGACGAAATTGCCGAATTCATTCAAGAATCTTATCCGAATCGTGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACTGGTTGCAAAGGAGCTAAGGGAGAGAGGAATTTCTGCTGGTCATTATCATGCAGATATGGATGTAAATGATCGTGAAAAAGTACATATACGATGGAGCAGTAACAAGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGCATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACGTACTACCAGGAAAGTGGTCGAGCTGGTCGAGACGGACTTCCTTCTGAATGCCTATTATACTTCAGACCTGGTGATGTTCCCCGTCAGAGCTCAATGGTCTTCTATGAAAATTCAGGACTGCAGAACCTCTATGACATAGTACGGTTTTGTCAGTCCAAAAGACAATGCCGGCGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCACTACAAGAATGCAATGGGATGTGCGACATTTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGGCATGCAAAATTGATGGTTTCTTTGTTGCAAGATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTTGAAAAAATGAAAACAAAACAGAAGGAAATAGGATCTGACCTAAAACGAGAGGAAATGGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGTTCTGAAAGAAGAATTTCAGCATACAGCTTATTCTACAAATGCTTACATTACTTTAGGGCCATTGGCGAAGCAAGTTTTGCAAGGGAAGAAGACTGTGAAGCTCGAGGTTTCTACAGAACAGAAAACTAAAGCTTCTGAAAGATTGAAACGCAGCCTCGGGTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCATTCATGGAGGAATACTTCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAAAAACCAAACTCACTAGAACAGTTGGAGAAAGTAATTGGAAAGTTGAAGACGGAAAAGTATGGAAATAATATTCTTGAGCAAATTGTAAACTATTCTGATTTCAAGCCGACTGATGAACAAGTAAGTGATGGTAGAGCTGCAAAAAGGTCAAAGACCAAGAAGAACGTTGTTCTTATTGAAACTAGTGAAGATGAAGCATGA 2106 0.4107 MENYEVLEELHNVEAEIEDVQEQIRALIEKQERLYERKSELNSILEACKESENEVNNASSSTVENWDGPFEWDSEAADLRLNIFGISSYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGVALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKENEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLVEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNRESGIVYCFSRKECELVAKELRERGISAGHYHADMDVNDREKVHIRWSSNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRFCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLMVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGSDLKREEMEQLILHLLLERVLKEEFQHTAYSTNAYITLGPLAKQVLQGKKTVKLEVSTEQKTKASERLKRSLGSSGLELKLDELRKELSSIHGGILPHSVLSTQQISLLCSQKPNSLEQLEKVIGKLKTEKYGNNILEQIVNYSDFKPTDEQVSDGRAAKRSKTKKNVVLIETSEDEA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02583 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Vivi2g02583 701 Gene3D - 10 279 IPR027417 -
Vivi2g02583 701 FunFam ATP-dependent DNA helicase 280 476 - -
Vivi2g02583 701 Gene3D HRDC domain 598 666 IPR044876 -
Vivi2g02583 701 CDD SF2_C_RecQ 280 416 - -
Vivi2g02583 701 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Vivi2g02583 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Vivi2g02583 701 Coils Coil 3 37 - -
Vivi2g02583 701 FunFam ATP-dependent DNA helicase 598 668 - -
Vivi2g02583 701 Pfam Helicase conserved C-terminal domain 304 406 IPR001650 -
Vivi2g02583 701 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vivi2g02583 701 CDD DEXHc_RecQ1 71 279 - -
Vivi2g02583 701 Pfam RecQ zinc-binding 419 475 IPR032284 -
Vivi2g02583 701 FunFam ATP-dependent DNA helicase 480 580 - -
Vivi2g02583 701 FunFam ATP-dependent DNA helicase 46 279 - -
Vivi2g02583 701 SMART helicmild6 326 407 IPR001650 -
Vivi2g02583 701 ProSiteProfiles HRDC domain profile. 594 673 IPR002121 GO:0003676
Vivi2g02583 701 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vivi2g02583 701 SMART ultradead3 85 288 IPR014001 -
Vivi2g02583 701 Gene3D - 280 476 IPR027417 -
Vivi2g02583 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Vivi2g02583 701 NCBIfam RecQ family ATP-dependent DNA helicase 82 505 IPR004589 GO:0004386|GO:0006310
Vivi2g02583 701 PANTHER DNA HELICASE RECQ FAMILY MEMBER 66 655 - -
Vivi2g02583 701 Pfam HRDC domain 603 662 IPR002121 GO:0003676
Vivi2g02583 701 Gene3D - 480 581 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02583 Vivi-Chr2 117019528 117033753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02583 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 19.830 1.49e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02583 K10899 - gmx:100817635 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02583 2 117019528 117033753 Vivi2g02583 2 117019528 117033753 ECH