Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02568 ATGCAGTTTTTGATATTCTACTGTGGTGAAAAGGCTGACAATGCTGTTGATTACGAAGATATTGATGAAGAATATGATGGTCCGGAGACTGAAACTGCAAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTCGCTGCCGAAGCCTCTCTTGAAGCTTTGGAGCGCAAAACTTCCGTCTTCGATGATGAAAATTATGATGAAGAATCTGAAAAGGAACAAGACTTAGAGAGTAATGATGCTAAAGTTGATAACATCTCCTTAGCTGTAGAGCAGGAGGAGAGCTTTGTAGATGCATCTAAAGGAGGGAGTGCTCTTGAGCATGATTTATATGATGGGTCGCCGCAAACTGAAGAACTGGATACTGATGTACAAATATCTGAGGAAGGACCTGAAGCTATAAAAAGATCTGTGGCTACACCGTTGCCTGTATTGTACGTGGACGATGGAAAAGTAGTTTTACGTTTCTCTGAAATCTTCGGTATTCAGGAACCTCCTCGAAAGGGAGAAAAGAAGGAGCGTCGGCATTCCACTCCTAGAGATAGATACAAGTCTTTGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAGTTCCTTAAAGGCTTCTCTCAGAGTCTCACACTTAGTAAACAGGTTTGTGTAGTCGATACTGATGTATCAGAAAACAATAATGTTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGAGATGCCTCACTTACTGCAAAAGATGATCGGCAACCAAAGGACTCTTGTCTTAGTGGTGAACCAATGAAAGGGGATTTTGCAGATGAACTTTCTTGGAAAGATCATCCCCTCATGTTGGCCAACTTCTATCCTCTTGATCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGTTGCAAGTGATAATGATAATAATATTGATAGCTATGAAATTTCTGGACCTGAATTGAGAGCTTTTGGTGATGCCGAAATAGAAATTGAAAGTGGGATACAAAATCTTCAGTCAGATCCCCATAAGATACTGGAGAAGAAAAATCATAATGTATTCATGTGCTGCTCTCCTGTTTCATTGGACCCGTTTGATTCAAGGGATTCTAATGGGGCTAAAACCAATTCAATATCCGAAAGTCCATTTCATCCCCAACTTCTGAGGCTAGAAGTAGACAGTTCTCATCTTGCAGATGAAAGAGGGGCAGATATATCTGAGAATCATAATCAAAGTGGTCAAGTAAAACGTTTGACCAAGGTTATGTCACAAAACAGAGACCTCATGGATGACTCATGGATAAACAAGATAATGTGGGAAGAGCTTGACAGGCCTAAGATGAAACCCAAGCTTATATTTGATCTTCAGGATAATCAGATGCACTTCGAAGTTTTGGATAGCAAGGATGGTACCCATCTTCGCCTTCATGCAGGGGCTATGATTTTAGCCCGCTCTTTGAATTCAACTAACGTGGACTCTTCTGAGCTACCGGGACATGGAGGTCAATATGGATGGAGATACGTTGCTAATGACAAACACTATTCAAATCGGAAAACTTCTCAGCAACTGAAATCAAACTCAAAAAAACGCTCAGCTCACGGTGTCAAAATTTTTCACTCGCAACCTGCACTGAAACTGCAGACCATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAGAGCACTGTGGTATCCCCATGATAATGAGGTGGCTGTTAAAGAACAAGGAAAATTACCAACAAAAGGACCCATGAAAATTATTATGAAAAGCTTGGGTGGCAAAGGGTGTAAACTGCATGTCAATGCTGAAGAAACTATCTCTTCTGTTAAAGTAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAGCAGTGAAAATATTTTATTTGGGTAGGGAGCTTGAAGATCCCATATCACTTGTTGCACAAAATGTTCAGCCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTATGGCCTAGGGCACAAAGAGTTCCTGGTGAGGACAAGTCGTTGCGTCCTCCGGGAGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGATGGACATGTGTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTCTCGGCAATGTTGGAATGGGTGCAAGACTTTGCACATATTATCAAAAAAGTTCTCCGGAAGACCAATCTGGGTCCTTATTACGCAACACAGATAGTAGCTTGGGGCATGTTATTTCCCTGGACCCTGCAGACAAATCTCCTTTTCTTGGTGATTTAAAACCTGGTAGCAGTCAGTCATCACTCGAGACCAATATGTATAGAGCACCCATATTTACTCATAAAGTTCCTCCAACTGACTACCTGCTGGTTCGTTCGTCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTGTTCTCGCCTGGAAGTAAGAATCTTCAGACTTTCATGATGAACAGGCTATTGGTACACATGTGCCGTGAGTTCCAAGCTGCAGAGAAGCAGCACTTGTCTCCATACATTCGCATTGACTACTTTCTTTCACAGTTTCCCTTCCTATCAGAAGCCTCATTTCGTAAAAGGATCAAGGAATATGCTAATTTACAGAGAGGCCCAAATGGACAATCCATTTTTGTTAAAAAGCGTAATTTCCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAACTTGTTTGTGCTTTTGAAAGCATGCAAGCTGGCCTCTACCGCTTAAAACATTTAGGAATAACTGAAACACATCCTAATAATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGAGAACTGCAAATTACTCCATGGAACTTGAGTAGCAATTTTGTTGCCTGTACAACTCAGGGTAAGGAAAATATTGAACGGATGGAAATTACTGGAGTTGGTGATCCATCAGGCCGCGGCTTGGGTTTTAGCTATGCTAGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAGTGGTGAAGAAAAAAGCAGCGGCTGGCAGGGGAGGTTCCACTGTTACCGGTACGGATGCTGATTTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTACTTCTTAAATTCAATGTTCCCGAGGAAGTCATTGCAAAACAAACCAGATGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAGGCTGCGTCTGGGGTTAAGGTTGATCCAACAACCATAGGAAAATATGCCCGTGGTCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAGGAGATTTGGGATAGGCAAGTTCAGAGTTTGTCAGCTTTAAATGGTGATGATAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGGGATCTGGAAAATTTGCTTGATGCTGAGGAATTTGAAGAGGGAGAAGAAGGTACTAATGACCTAAAACGTGATAAGGGAGACAGTGTTAAGGGTCTTAAAATGAGAAGACGCACAACCTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCCACTGAATTATGCAGGCTGCTTATGGATGATGATGGAGCTTACCGGAAGAAAAAGAAGAATGCCAGGGTTATGGTGGATGCAAGAAGATTGATACCGAAACTACAACCAAAATTTGTCTTTGACAGCACTGAACAAGTAAAGCTAACAAATACAACATTGCAACTTGATGGAACTAATCATTTTAAGGAGGATGCAATTACAGATCATAGGGAGGATGATAAATTTTCTGCTAAGAAAAGCAAATCAGTTAAGGTCAATAAAGCAAAGAAGAGTGACATTTCACCTATTAGTGTATCAAATAAAAAAATCAAACTAAATATGGGAGAAGGAATCAAGAACCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACGAACAAGAATTGTCCGAAATATGGTGAAGATCTAGAAGCACAACTTGAACCTACGGACATGGAAAAATTAACTGGACGATCCAGCTTTGTTGATTCTTCTAGCCAGTCTCAGCATAAACTCTCCTCCAAAAAGTCAATATCAAAGATCGTAACAAAAATTGCTCCAGTTGAGAATTCATCAAAAATTCCGTTGAAGTTCAAATGCAGTTCGACAGAGAAATCTTCTGATAGACATGCAATAGAAACCCTGCAGAGTATTGACAAGCCAGTCACTTCTGACTCAGAAACTGCTAAGTCTGCTAAGATTAGTAAGATAATTATTCCAAACAAAGTGAAATCAGAGGATACACAGGCTGAATCTCTTAAGCATGCTATTGTTATACGTCCTCCTACTGATCCTGGTAGAGGTCAGGTTGATTCTCATAAGTTCCCAATTAAAATCCGCCCGCCTGCAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAACGAACAAAGGATGTTGCTGATCTGGAACTTGACAGTCCTGGTGGAAACACAGGACTTGAACACAGAAAAACTAAAAGAATTGTGGAATTAGCGAATTTTGAGAAGCACAGAAAGCAGGAGACAATGTATTCAACTGAAAGTATGGTAAAATGGAATGCTAAAGAGGATAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGAAGTGAGACTTAGAGAAAACAATGCAAAGAGGTATGGCACAGAAGAAAGGAGGATACGCAAGGAACGAGAAAGGTTAGATGAGTTAAAAAGATATGAACAAGAAAGGTTAGATGAGTTAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAAGAGGAAGAACGACAAAAAGCTAAGAAGAAAAAGAAAAAGAGAAAGACCGATTTAAGAGATGAGTATTTAGATGATCCCAGGGAAAGAAGATATGGTAAGAGGATGCTAGAAAGAGAACGGAGTGGAAAACGGAGATCAGTTGTTGAGACAGGAAAGATTAGTGGAGATTTTATGCCGCCAACTAAACGCCGAAGAGGGGGAGGAGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGTATTGTGGATGCCATTGTGAAAGATAGGCACGATCTGTCTTATCTTTTTGTAAAACCAGTTCCCAAGAAAGAAGCCCCTGACTACCTGGATATCATAGAGACGCCTATGGATCTTTCCAAAATCAGGCAACGGGTACGTAATATGGAGTACAAAAGTCGTGAAGACTTCAGACATGATGTATGGCAAATTACTTTTAATGCCCATAAATATAATGATGGACGAAATCCTGGAATCCCTCCAGTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAATCTTACTGCTGCTGAAGCTGGTATTGAAATTAAAGATTTCTAA 5457 0.4068 MQFLIFYCGEKADNAVDYEDIDEEYDGPETETANEEDYLLPKKEFFAAEASLEALERKTSVFDDENYDEESEKEQDLESNDAKVDNISLAVEQEESFVDASKGGSALEHDLYDGSPQTEELDTDVQISEEGPEAIKRSVATPLPVLYVDDGKVVLRFSEIFGIQEPPRKGEKKERRHSTPRDRYKSLDLSDDIVEEDEEEFLKGFSQSLTLSKQVCVVDTDVSENNNVDLEFPKFGFLHGDASLTAKDDRQPKDSCLSGEPMKGDFADELSWKDHPLMLANFYPLDQRDWEDEILWGNSPVASDNDNNIDSYEISGPELRAFGDAEIEIESGIQNLQSDPHKILEKKNHNVFMCCSPVSLDPFDSRDSNGAKTNSISESPFHPQLLRLEVDSSHLADERGADISENHNQSGQVKRLTKVMSQNRDLMDDSWINKIMWEELDRPKMKPKLIFDLQDNQMHFEVLDSKDGTHLRLHAGAMILARSLNSTNVDSSELPGHGGQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPTKGPMKIIMKSLGGKGCKLHVNAEETISSVKVKASKKLDFKASEAVKIFYLGRELEDPISLVAQNVQPNSLLHLVRTKIHLWPRAQRVPGEDKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLGNVGMGARLCTYYQKSSPEDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPTDYLLVRSSKGKLSLRRIDKVNVVGQQEPLMEVFSPGSKNLQTFMMNRLLVHMCREFQAAEKQHLSPYIRIDYFLSQFPFLSEASFRKRIKEYANLQRGPNGQSIFVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTTQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSALNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDSVKGLKMRRRTTLAQAEEEIEDEAAEATELCRLLMDDDGAYRKKKKNARVMVDARRLIPKLQPKFVFDSTEQVKLTNTTLQLDGTNHFKEDAITDHREDDKFSAKKSKSVKVNKAKKSDISPISVSNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLEPTDMEKLTGRSSFVDSSSQSQHKLSSKKSISKIVTKIAPVENSSKIPLKFKCSSTEKSSDRHAIETLQSIDKPVTSDSETAKSAKISKIIIPNKVKSEDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDREQSHKKIVIKRTKDVADLELDSPGGNTGLEHRKTKRIVELANFEKHRKQETMYSTESMVKWNAKEDRRWWEEQEKRRNEVRLRENNAKRYGTEERRIRKERERLDELKRYEQERLDELKRYEEDIRREREEEERQKAKKKKKKRKTDLRDEYLDDPRERRYGKRMLERERSGKRRSVVETGKISGDFMPPTKRRRGGGGEVGLANILESIVDAIVKDRHDLSYLFVKPVPKKEAPDYLDIIETPMDLSKIRQRVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDNLTAAEAGIEIKDF 1818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02568 1818 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 10 1814 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vivi2g02568 1818 PRINTS Bromodomain signature 1731 1747 IPR001487 GO:0005515
Vivi2g02568 1818 PRINTS Bromodomain signature 1717 1730 IPR001487 GO:0005515
Vivi2g02568 1818 PRINTS Bromodomain signature 1747 1765 IPR001487 GO:0005515
Vivi2g02568 1818 PRINTS Bromodomain signature 1765 1784 IPR001487 GO:0005515
Vivi2g02568 1818 SUPERFAMILY Ubiquitin-like 557 657 IPR029071 -
Vivi2g02568 1818 Pfam Ubiquitin family 591 659 IPR000626 GO:0005515
Vivi2g02568 1818 MobiDBLite consensus disorder prediction 1160 1186 - -
Vivi2g02568 1818 Gene3D - 1614 1817 IPR036427 GO:0005515
Vivi2g02568 1818 Coils Coil 1587 1646 - -
Vivi2g02568 1818 MobiDBLite consensus disorder prediction 1427 1441 - -
Vivi2g02568 1818 Coils Coil 1182 1213 - -
Vivi2g02568 1818 Pfam Protein of unknown function (DUF3591) 507 1073 IPR022591 -
Vivi2g02568 1818 Pfam Zinc knuckle 1331 1350 IPR041670 -
Vivi2g02568 1818 CDD Bromodomain 1703 1799 - -
Vivi2g02568 1818 ProSiteProfiles Ubiquitin domain profile. 587 657 IPR000626 GO:0005515
Vivi2g02568 1818 SMART bromo_6 1693 1804 IPR001487 GO:0005515
Vivi2g02568 1818 SUPERFAMILY Bromodomain 1685 1805 IPR036427 GO:0005515
Vivi2g02568 1818 MobiDBLite consensus disorder prediction 1419 1441 - -
Vivi2g02568 1818 FunFam Transcription initiation factor TFIID subunit 1 569 659 - -
Vivi2g02568 1818 Pfam Bromodomain 1714 1780 IPR001487 GO:0005515
Vivi2g02568 1818 MobiDBLite consensus disorder prediction 58 81 - -
Vivi2g02568 1818 SMART ubq_7 587 659 IPR000626 GO:0005515
Vivi2g02568 1818 MobiDBLite consensus disorder prediction 1623 1651 - -
Vivi2g02568 1818 MobiDBLite consensus disorder prediction 1165 1186 - -
Vivi2g02568 1818 ProSitePatterns Bromodomain signature. 1719 1776 IPR018359 -
Vivi2g02568 1818 Gene3D - 569 659 - -
Vivi2g02568 1818 ProSiteProfiles Bromodomain profile. 1714 1784 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02568 Vivi-Chr2 116737166 116754591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02568 587 657 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 5.78e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02568 K03125 - gmx:100780733 2810.4