Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02566 ATGGGATATGATTCTGATAGCCCCTCACGAGATGAAGATGACGAAGAAGAATATGAAGAGTCTGGCAAGGGTAACGGTTTATTTGGGTTCATGTTTGGAAATGTTGATAACTCTGGTGATCTCGATGCTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCATTGGCTGACAAGCTGGGACCATCACTGACAGATATAGATTTGTCAGGAAAGTCACCACATACACCACATGGCATTGTTGAACAAGACTGTGGTGAAAAGGCTGACAATGCTGTTGATTACGAAGATATTGATGAAGAATATGATGGTCCGGAGACTGAAACTGCAAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTCGCTGCCGAAGCCTCTCTTGAAGCTTTGGAGCGCAAAACTTCCGTCTTCGATGATGAAAATTATGATGAAGAATCTGAAAAGGAACAAGACTTAGAGAGTAATGATGCTAAAGTTGATAACATCTCCTTAGCTGTAGAGCAGGAGGAGAGCTTTGTAGATGCATCTAAAGGAGGGAGTGCTCTTGAGCATGATTTATATGATGGGTCGCCGCAAACTGAAGAACTGGATACTGATGTACAAATATCTGAGGAAGGACCTGAAGCTATAAAAAGATCTGTGGCTACACCGTTGCCTGTATTGTACGTGGACGATGGAAAAGTAGTTTTACGTTTCTCTGAAATCTTCGGTATTCAGGAACCTCCTCGAAAGGGAGAAAAGAAGGAGCGTCGGCATTCCACTCCTAGAGATAGATACAAGTCTTTGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAGTTCCTTAAAGGCTTCTCTCAGAGTCTCACACTTAGTAAACAGGTTTGTGTAGTCGATACTGATGTATCAGAAAACAATAATGTTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGAGATGCCTCACTTACTGCAAAAGATGATCGGCAACCAAAGGACTCTTGTCTTAGTGGTGAACCAATGAAAGGGGATTTTGCAGATGAACTTTCTTGGAAAGATCATCCCCTCATGTTGGCCAACTTCTATCCTCTTGATCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGTTGCAAGTGATAATGATAATAATATTGATAGCTATGAAATTTCTGGACCTGAATTGAGAGCTTTTGGTGATGCCGAAATAGAAATTGAAAGTGGGATACAAAATCTTCAGTCAGATCCCCATAAGATACTGGAGAAGAAAAATCATAATGTATTCATGTGCTGCTCTCCTGTTTCATTGGACCCGTTTGATTCAAGGGATTCTAATGGGGCTAAAACCAATTCAATATCCGAAAGTCCATTTCATCCCCAACTTCTGAGGCTAGAAGTAGACAGTTCTCATCTTGCAGATGAAAGAGGGGCAGATATATCTGAGAATCATAATCAAAGTGGTCAAGTAAAACGTTTGACCAAGGTTATGTCACAAAACAGAGACCTCATGGATGACTCATGGATAAACAAGATAATGTGGGAAGAGCTTGACAGGCCTAAGATGAAACCCAAGCTTATATTTGATCTTCAGGATAATCAGATGCACTTCGAAGTTTTGGATAGCAAGGATGGTACCCATCTTCGCCTTCATGCAGGGGCTATGATTTTAGCCCGCTCTTTGAATTCAACTAACGTGGACTCTTCTGAGCTACCGGGACATGGAGGTCAATATGGATGGAGATACGTTGCTAATGACAAACACTATTCAAATCGGAAAACTTCTCAGCAACTGAAATCAAACTCAAAAAAACGCTCAGCTCACGGTGTCAAAATTTTTCACTCGCAACCTGCACTGAAACTGCAGACCATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAGAGCACTGTGGTATCCCCATGATAATGAGGTGGCTGTTAAAGAACAAGGAAAATTACCAACAAAAGGACCCATGAAAATTATTATGAAAAGCTTGGGTGGCAAAGGGTGTAAACTGCATGTCAATGCTGAAGAAACTATCTCTTCTGTTAAAGTAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAGCAGTGAAAATATTTTATTTGGGTAGGGAGCTTGAAGATCCCATATCACTTGTTGCACAAAATGTTCAGCCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTATGGCCTAGGGCACAAAGAGTTCCTGGTGAGGACAAGTCGTTGCGTCCTCCGGGAGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGATGGACATGTGTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTCTCGGCAATGTTGGAATGGGTGCAAGACTTTGCACATATTATCAAAAAAGTTCTCCGGAAGACCAATCTGGGTCCTTATTACGCAACACAGATAGTAGCTTGGGGCATGTTATTTCCCTGGACCCTGCAGACAAATCTCCTTTTCTTGGTGATTTAAAACCTGGTAGCAGTCAGTCATCACTCGAGACCAATATGTATAGAGCACCCATATTTACTCATAAAGTTCCTCCAACTGACTACCTGCTGGTTCGTTCGTCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTGTTCTCGCCTGGAAGTAAGAATCTTCAGACTTTCATGATGAACAGGCTATTGGTACACATGTGCCGTGAGTTCCAAGCTGCAGAGAAGCAGCACTTGTCTCCATACATTCGCATTGACTACTTTCTTTCACAGTTTCCCTTCCTATCAGAAGCCTCATTTCGTAAAAGGATCAAGGAATATGCTAATTTACAGAGAGGCCCAAATGGACAATCCATTTTTGTTAAAAAGCGTAATTTCCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAACTTGTTTGTGCTTTTGAAAGCATGCAAGCTGGCCTCTACCGCTTAAAACATTTAGGAATAACTGAAACACATCCTAATAATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGAGAACTGCAAATTACTCCATGGAACTTGAGTAGCAATTTTGTTGCCTGTACAACTCAGGGTAAGGAAAATATTGAACGGATGGAAATTACTGGAGTTGGTGATCCATCAGGCCGCGGCTTGGGTTTTAGCTATGCTAGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAGTGGTGAAGAAAAAAGCAGCGGCTGGCAGGGGAGGTTCCACTGTTACCGGTACGGATGCTGATTTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTACTTCTTAAATTCAATGTTCCCGAGGAAGTCATTGCAAAACAAACCAGATGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAGGCTGCGTCTGGGGTTAAGGTTGATCCAACAACCATAGGAAAATATGCCCGTGGTCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAGGAGATTTGGGATAGGCAAGTTCAGAGTTTGTCAGCTTTAAATGGTGATGATAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGGGATCTGGAAAATTTGCTTGATGCTGAGGAATTTGAAGAGGGAGAAGAAGGTACTAATGACCTAAAACGTGATAAGGGAGACAGTGTTAAGGGTCTTAAAATGAGAAGACGCACAACCTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCCACTGAATTATGCAGGCTGCTTATGGATGATGATGGAGCTTACCGGAAGAAAAAGAAGAATGCCAGGGTTATGGTGGATGCAAGAAGATTGATACCGAAACTACAACCAAAATTTGTCTTTGACAGCACTGAACAAGTAAAGCTAACAAATACAACATTGCAACTTGATGGAACTAATCATTTTAAGGAGGATGCAATTACAGATCATAGGGAGGATGATAAATTTTCTGCTAAGAAAAGCAAATCAGTTAAGGTCAATAAAGCAAAGAAGAGTGACATTTCACCTATTAGTGTATCAAATAAAAAAATCAAACTAAATATGGGAGAAGGAATCAAGAACCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACGAACAAGAATTGTCCGAAATATGGTGAAGATCTAGAAGCACAACTTGAACCTACGGACATGGAAAAATTAACTGGACGATCCAGCTTTGTTGATTCTTCTAGCCAGTCTCAGCATAAACTCTCCTCCAAAAAGTCAATATCAAAGATCGTAACAAAAATTGCTCCAGTTGAGAATTCATCAAAAATTCCGTTGAAGTTCAAATGCAGTTCGACAGAGAAATCTTCTGATAGACATGCAATAGAAACCCTGCAGAGTATTGACAAGCCAGTCACTTCTGACTCAGAAACTGCTAAGTCTGCTAAGATTAGTAAGATAATTATTCCAAACAAAGTGAAATCAGAGGATACACAGGCTGAATCTCTTAAGCATGCTATTGTTATACGTCCTCCTACTGATCCTGGTAGAGGTCAGGTTGATTCTCATAAGTTCCCAATTAAAATCCGCCCGCCTGCAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAACGAACAAAGGATGTTGCTGATCTGGAACTTGACAGTCCTGGTGGAAACACAGGACTTGAACACAGAAAAACTAAAAGAATTGTGGAATTAGCGAATTTTGAGAAGCACAGAAAGCAGGAGACAATGTATTCAACTGAAAGTATGGTAAAATGGAATGCTAAAGAGGATAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGAAGTGAGACTTAGAGAAAACAATGCAAAGAGGTATGGCACAGAAGAAAGGAGGATACGCAAGGAACGAGAAAGGTTAGATGAGTTAAAAAGATATGAACAAGAAAGGTTAGATGAGTTAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAAGAGGAAGAACGACAAAAAGCTAAGAAGAAAAAGAAAAAGAGAAAGACCGATTTAAGAGATGAGTATTTAGATGATCCCAGGGAAAGAAGATATGGTAAGAGGATGCTAGAAAGAGAACGGAGTGGAAAACGGAGATCAGTTGTTGAGACAGGAAAGATTAGTGGAGATTTTATGCCGCCAACTAAACGCCGAAGAGGGGGAGGAGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGTATTGTGGATGCCATTGTGAAAGATAGGCACGATCTGTCTTATCTTTTTGTAAAACCAGTTCCCAAGAAAGAAGCCCCTGACTACCTGGATATCATAGAGACGCCTATGGATCTTTCCAAAATCAGGCAACGGGTACGTAATATGGAGTACAAAAGTCGTGAAGACTTCAGACATGATGTATGGCAAATTACTTTTAATGCCCATAAATATAATGATGGACGAAATCCTGGAATCCCTCCAGTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAATCTTACTGCTGCTGAAGCTGGTATTGAAATTAAAGATTTCTAA 5691 0.4084 MGYDSDSPSRDEDDEEEYEESGKGNGLFGFMFGNVDNSGDLDADYLDEDAKEHLSALADKLGPSLTDIDLSGKSPHTPHGIVEQDCGEKADNAVDYEDIDEEYDGPETETANEEDYLLPKKEFFAAEASLEALERKTSVFDDENYDEESEKEQDLESNDAKVDNISLAVEQEESFVDASKGGSALEHDLYDGSPQTEELDTDVQISEEGPEAIKRSVATPLPVLYVDDGKVVLRFSEIFGIQEPPRKGEKKERRHSTPRDRYKSLDLSDDIVEEDEEEFLKGFSQSLTLSKQVCVVDTDVSENNNVDLEFPKFGFLHGDASLTAKDDRQPKDSCLSGEPMKGDFADELSWKDHPLMLANFYPLDQRDWEDEILWGNSPVASDNDNNIDSYEISGPELRAFGDAEIEIESGIQNLQSDPHKILEKKNHNVFMCCSPVSLDPFDSRDSNGAKTNSISESPFHPQLLRLEVDSSHLADERGADISENHNQSGQVKRLTKVMSQNRDLMDDSWINKIMWEELDRPKMKPKLIFDLQDNQMHFEVLDSKDGTHLRLHAGAMILARSLNSTNVDSSELPGHGGQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPTKGPMKIIMKSLGGKGCKLHVNAEETISSVKVKASKKLDFKASEAVKIFYLGRELEDPISLVAQNVQPNSLLHLVRTKIHLWPRAQRVPGEDKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLGNVGMGARLCTYYQKSSPEDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPTDYLLVRSSKGKLSLRRIDKVNVVGQQEPLMEVFSPGSKNLQTFMMNRLLVHMCREFQAAEKQHLSPYIRIDYFLSQFPFLSEASFRKRIKEYANLQRGPNGQSIFVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTTQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSALNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDSVKGLKMRRRTTLAQAEEEIEDEAAEATELCRLLMDDDGAYRKKKKNARVMVDARRLIPKLQPKFVFDSTEQVKLTNTTLQLDGTNHFKEDAITDHREDDKFSAKKSKSVKVNKAKKSDISPISVSNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLEPTDMEKLTGRSSFVDSSSQSQHKLSSKKSISKIVTKIAPVENSSKIPLKFKCSSTEKSSDRHAIETLQSIDKPVTSDSETAKSAKISKIIIPNKVKSEDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDREQSHKKIVIKRTKDVADLELDSPGGNTGLEHRKTKRIVELANFEKHRKQETMYSTESMVKWNAKEDRRWWEEQEKRRNEVRLRENNAKRYGTEERRIRKERERLDELKRYEQERLDELKRYEEDIRREREEEERQKAKKKKKKRKTDLRDEYLDDPRERRYGKRMLERERSGKRRSVVETGKISGDFMPPTKRRRGGGGEVGLANILESIVDAIVKDRHDLSYLFVKPVPKKEAPDYLDIIETPMDLSKIRQRVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDNLTAAEAGIEIKDF 1896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 1505 1519 - -
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 1 29 - -
Vivi2g02566 1896 Gene3D - 19 65 IPR036741 -
Vivi2g02566 1896 SUPERFAMILY Bromodomain 1763 1883 IPR036427 GO:0005515
Vivi2g02566 1896 Pfam Zinc knuckle 1409 1428 IPR041670 -
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 1243 1264 - -
Vivi2g02566 1896 Pfam Ubiquitin family 669 737 IPR000626 GO:0005515
Vivi2g02566 1896 ProSiteProfiles Ubiquitin domain profile. 665 735 IPR000626 GO:0005515
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 1238 1264 - -
Vivi2g02566 1896 Coils Coil 1260 1291 - -
Vivi2g02566 1896 FunFam Transcription initiation factor TFIID subunit 1 647 737 - -
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 68 89 - -
Vivi2g02566 1896 ProSitePatterns Bromodomain signature. 1797 1854 IPR018359 -
Vivi2g02566 1896 SUPERFAMILY Ubiquitin-like 635 735 IPR029071 -
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 1497 1519 - -
Vivi2g02566 1896 SMART ubq_7 665 737 IPR000626 GO:0005515
Vivi2g02566 1896 Gene3D - 647 737 - -
Vivi2g02566 1896 Coils Coil 1665 1724 - -
Vivi2g02566 1896 Pfam Protein of unknown function (DUF3591) 585 1151 IPR022591 -
Vivi2g02566 1896 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 10 1892 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 1701 1729 - -
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 135 159 - -
Vivi2g02566 1896 CDD Bromodomain 1781 1877 - -
Vivi2g02566 1896 PRINTS Bromodomain signature 1809 1825 IPR001487 GO:0005515
Vivi2g02566 1896 PRINTS Bromodomain signature 1795 1808 IPR001487 GO:0005515
Vivi2g02566 1896 PRINTS Bromodomain signature 1825 1843 IPR001487 GO:0005515
Vivi2g02566 1896 PRINTS Bromodomain signature 1843 1862 IPR001487 GO:0005515
Vivi2g02566 1896 ProSiteProfiles Bromodomain profile. 1792 1862 IPR001487 GO:0005515
Vivi2g02566 1896 Gene3D - 1694 1895 IPR036427 GO:0005515
Vivi2g02566 1896 MobiDBLite consensus disorder prediction 174 196 - -
Vivi2g02566 1896 Pfam TATA box-binding protein binding 15 58 IPR009067 -
Vivi2g02566 1896 Pfam Bromodomain 1792 1858 IPR001487 GO:0005515
Vivi2g02566 1896 SUPERFAMILY TAF(II)230 TBP-binding fragment 21 59 IPR036741 -
Vivi2g02566 1896 SMART bromo_6 1771 1882 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02566 Vivi-Chr2 116735965 116754591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02566 665 735 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 6.16e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02566 K03125 - gmx:100780733 2934.05