Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02562 ATGGAAAATGATGAGGGTGATCCTACTTTTAATCACAAGGTTATTTTCCAAATTATTATCTTAGTTTCAGCTGCATTTGTTGTTTCTTCAGTGTACCATCTCATAGCCATTTGTTTGTGTCACCGACGACGAACCATGACAGGTCAAAACCAACTACAACCACCAAATCAAGCTGCGATACCTAGCCTCGACGTAAGGACATCCTCATCAGTACCTGTAGTAATCCGAATTCCAACACACAAGTACCACAAAAGAGATAAAGTTGATGCTGTTTCGGACGATGAAGGCGACACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAGGACTATGCCGGAGTGCTTGCACTCTTATCATGTAAATTGTATTGACATGTGGCTCCATTCGCATTCCAGTTGCCCTATTTGTCGCGCTACTGCTGATGCTGCCCCTTTGCCGGCTGTGAGTGCAAATCATCACAGCATAGATATGAATATGGCTCCACTTGGTACTGTCATGCAAAGTGGATTGGCGCGATTATGGTGA 537 0.4469 MENDEGDPTFNHKVIFQIIILVSAAFVVSSVYHLIAICLCHRRRTMTGQNQLQPPNQAAIPSLDVRTSSSVPVVIRIPTHKYHKRDKVDAVSDDEGDTCAVCLGDFEEGEELRTMPECLHSYHVNCIDMWLHSHSSCPICRATADAAPLPAVSANHHSIDMNMAPLGTVMQSGLARLW 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02562 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 147 IPR013083 -
Vivi2g02562 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 144 IPR044675 -
Vivi2g02562 178 SMART ring_2 99 140 IPR001841 -
Vivi2g02562 178 Pfam Ring finger domain 97 141 IPR001841 -
Vivi2g02562 178 CDD RING-H2_EL5-like 99 141 - -
Vivi2g02562 178 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Vivi2g02562 178 SUPERFAMILY RING/U-box 88 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02562 Vivi-Chr2 116582766 116583302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02562 5 141 C3H Transcription Factor Family AT1G76410 34.043 2.41e-21 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02562 - - psat:127119859 188.348