Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02561 ATGGAAAATGATAAGAGTGATTCTTCTTTTGGTCACAACAAGGTTATTTTCCAAATTATTATCTTAGTTTCAGCTGCATTTATTGTTTCTTCAGTGTACCATCTCATAGCCATTTGTTTGTGTCACCGACGACGAACCACAACAGATCAAAATCAACTACAACCACCAAATCAAGCTGCGATGCCTAGCCTCGCCGAAAGGACTTCCTCATCAGTACCTGTAGTACACCGAATTCCAACACACAAGTATCACAAAAGAGATAAAGTTGATGCTGTTTCGGACGATGAAGGCGGCACATGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAGGACCATGCCGGAGTGCTTGCATTCTTATCATGTAGATTGTATTGACATGTGGCTCCATTCGCATTCGAGTTGCCCTATTTGTCGTGCTGGTGCTGCTCCTTCGCAGGCAGTGAGATCAAATCATCACAGCATAGATATGAATATGGCTCCACTTGGTACTGTCATGCAAAGTGGATTGGCGCGATGGTGA 531 0.4426 MENDKSDSSFGHNKVIFQIIILVSAAFIVSSVYHLIAICLCHRRRTTTDQNQLQPPNQAAMPSLAERTSSSVPVVHRIPTHKYHKRDKVDAVSDDEGGTCAVCLGDFEEGEELRTMPECLHSYHVDCIDMWLHSHSSCPICRAGAAPSQAVRSNHHSIDMNMAPLGTVMQSGLARW 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02561 176 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Vivi2g02561 176 SUPERFAMILY RING/U-box 87 148 - -
Vivi2g02561 176 CDD RING-H2_EL5-like 100 142 - -
Vivi2g02561 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 146 IPR044675 -
Vivi2g02561 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 146 IPR013083 -
Vivi2g02561 176 SMART ring_2 100 141 IPR001841 -
Vivi2g02561 176 MobiDBLite consensus disorder prediction 50 71 - -
Vivi2g02561 176 Pfam Ring finger domain 99 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02561 Vivi-Chr2 116569547 116570957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02561 8 169 C3H Transcription Factor Family AT1G04360 32.258 5.47e-24 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02561 - - psat:127119859 192.2