Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02560 ATGGCAGATGGTGACCATCCTTCCTATCAAAACGTTATTGTCATAATTATTGCCATTGGTTCAGCTGCATTAGTTGTTGTCTCAATGTATCGTGTCATGAGCATTTGGTTTTCTCGCCACCAAAGCACCACCGCAGATCAAACTCAAAGTCAAAGCCCTCCACAACCACCACAGTTTTCCGCAACTTTGAGCCTCGGCGAAAGTGCATCCTCATCAATAGTACACCTAATTCCAACACACAAGTATCATAAACGAAATAAAGTTGATGTGGTTTCGGACGGTGATGAAGGCGGCGGCACCGCGTGTGCCGTGTGTTTGGGAGATTTTGAAGAGGGAGAGGAATTGAAGACTATGCCTGAGTGTTTGCACTCTTTTCATGTACTGTGTATTGACATGTGGCTTCATTCGCATTCGAGTTGTCCCGTTTGCCGCGCCATTGCCGCCCCTTCGCCTGCAGTGAATGAAGACCTTCACAGAATAGATATGAGTCATACAGTTCCACTTGCTATCATGCAGAGTGGATTGGTGAGATTTTGA 537 0.46 MADGDHPSYQNVIVIIIAIGSAALVVVSMYRVMSIWFSRHQSTTADQTQSQSPPQPPQFSATLSLGESASSSIVHLIPTHKYHKRNKVDVVSDGDEGGGTACAVCLGDFEEGEELKTMPECLHSFHVLCIDMWLHSHSSCPVCRAIAAPSPAVNEDLHRIDMSHTVPLAIMQSGLVRF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02560 178 Pfam Ring finger domain 101 144 IPR001841 -
Vivi2g02560 178 CDD RING-H2_EL5-like 102 144 - -
Vivi2g02560 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 146 IPR044675 -
Vivi2g02560 178 SUPERFAMILY RING/U-box 89 150 - -
Vivi2g02560 178 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vivi2g02560 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 149 IPR013083 -
Vivi2g02560 178 SMART ring_2 102 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02560 Vivi-Chr2 116535437 116536683 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02560 14 157 C3H Transcription Factor Family AT5G17600 34.211 4.93e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02560 - - vvo:131646659 302.753