Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02559 ATGGGAGTTGATAATGGTGATAATCCTCTATCTGACAAAGTTGTTATCCTCCTTATTGCCATGGGTTCAGCATTATTTGTTGTCTCATTGTACCATGTTATATCCATTTGTTTTTGCAGCCAACAACGAACCACCGCAAACCAAAACTCGCCACAGCTCGACCGCAACAACGAAAGCACATTGGTGTCAGTAGCAAACATCATTCCAACGCACAAGTACCTCAAGACAAGCAAAGCTGGTGTTTCTGATGACGAAGGCGGCGACACATGTGCAGTGTGTTTGGGAGATTTTGAGGAGGGTGAAGAGTTGAGGACTATGCCTGAGTGCTTGCACTCCTTTCATGTAGAGTGTATTGACATGTGGCTCCATTCGCATTCGAGTTGCCCCATTTGCCGTGCCAGCGCCGCTCCTTCGCCGGCCGTGAATGAACAACATCGTAGCATAGATATTAGTCATAATACGGCTCCACTTGCTATCATGCAACATGGATTGGTGCGATGGTGA 504 0.4683 MGVDNGDNPLSDKVVILLIAMGSALFVVSLYHVISICFCSQQRTTANQNSPQLDRNNESTLVSVANIIPTHKYLKTSKAGVSDDEGGDTCAVCLGDFEEGEELRTMPECLHSFHVECIDMWLHSHSSCPICRASAAPSPAVNEQHRSIDISHNTAPLAIMQHGLVRW 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02559 167 CDD RING-H2_EL5-like 90 132 - -
Vivi2g02559 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Vivi2g02559 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 136 IPR044675 -
Vivi2g02559 167 SUPERFAMILY RING/U-box 84 138 - -
Vivi2g02559 167 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Vivi2g02559 167 SMART ring_2 90 131 IPR001841 -
Vivi2g02559 167 Pfam Ring finger domain 88 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02559 Vivi-Chr2 116527979 116528651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02559 55 150 C3H Transcription Factor Family AT4G10160 42.105 9.92e-25 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02559 - - psat:127119859 293.893