Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02550 ATGGAGTCCAGTGAGCATGAAAGGTTGTCGGTTAGAGAGTTTCGTGCAAATGGAAGCAGCATGATTACATCAGAAGTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCTTCGTTGCGAGAAGGGTTGTCACTCAATTTCGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTCTTTGATGGAATCGATCTCCAAGCTGCAATCCAGCGGTTGCAACCCACCTTGGCTGAAAAACCACCCGTCAAAAAAGGCCGCCCTCGTACAGAATCACCTTCTTCAGTCTCTCAACATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAATCCAAGTCTCAACAAAAACTTGGAAAGTTTGCTGAAGCTGCTAATGACTGTAAACAGATTCTGGATGCCGTTGAGAAGATATTTTATCAGGGTATACTTGATTTTCAAGTGGACAACAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGGTGGTTTCTACGATGAGGCAATCTCTGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGAATGTTGTTCAAGAATTCAGAAATCGTTCGTTGTTTTTCTTCTGTACAGTGGTGTGGAGGCAAGTCCACCCAGTTTAGCAGTTCAGATTGACGGTTCTTATGTGCCTAAGAATAATCTCGAAGAGGCGATTCTGCTTTTAATGATTCTTATAAGGAAGTTTTGTAATGGCAAGATAAAATGGGATCCTTCAATCATGGAACACCTAACTTTTGCATTTTCTATATGTAGCCAAACTTCCGTTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATTTTGCAGCTGGAAAAAATGTCAGTGCTTTGAATCTGATAAGAAAGTCGTTGCACAAACACGAACGGCCAGATGACCTTACATCGTTGTTATTAGCTGCCAAGATCTGCAGTGAGGATCCGTATCTTGCTGGCGAGGGAGTCGGCCATGCACAGAAAGCATTCAGTAATGCTCATGGTCCGAATGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTTGGAAAGCAAGCTAAGGTTGCTTCCTCGGACTTCGAGAGGTCTCGGCTTCAGTCCAAAGCTCTGGAATCATTAGAGGAGGCAACTAGATTGGAGAAAAACAATTCTGATCTGATTTTTGAGTTGGCTGTTCAGTACGCGAAGCATCGGAATTTGACTGCTGCTTTGCGTTCCGCTCGGCATTTCTTCAATGAAACCGGCGGCTCTGTAATCAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAGCAAAGATTTCCGGAAGCTGAAGTGGTGACAGATGCTGGTTTAGATCAGACTGCAAGATGGGAGCAGGGGTCTCTACTTAAGCTTAAAGCAAAGCTGAAGGTCTCCCAATTAAAACCGATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCCTCCGGGTCTTTCCAAATTAGTTCAAAGGTTGACGATGATAAAGTTAATGAATTCGATATTTGGCACGGTCTTGCAAATTTGTATGCCAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGGAGTACTCTGCAGCAATTTTGCACACGGAAGGTATTTTGTTCGAAGGACGCGGCCAGAATATAGAAGCTCTCAATGCTTCTATTAATGCTGTACTAGTTGAACCAAACCACATTCCTAGCAAACTCTTAATGAGCGCTTTGATTCACAAAATGGGTACGAAGGCGTTGCCTGCTGCAAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCAACCAACCGGATGGCTTGGTATTACTTAGGATTGGTTCACAAGCACGATGGCCGAATCAGTGATGCTGCGGACTGCTTCCAGGCAGCTTCCATGCTGGAAGAGTTAGATCCCATTGAAAGTTTCAGCAATTTTTTTTGA 2085 0.4374 MESSEHERLSVREFRANGSSMITSEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPTLAEKPPVKKGRPRTESPSSVSQHAASLVLEAIYLKSKSQQKLGKFAEAANDCKQILDAVEKIFYQGILDFQVDNKLQEIVSHAVELLPELWKQGGFYDEAISAYRRALLSQWNLDNECCSRIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILIRKFCNGKIKWDPSIMEHLTFAFSICSQTSVLAKQFEDLMPGVYHRIDRWNSLALCHFAAGKNVSALNLIRKSLHKHERPDDLTSLLLAAKICSEDPYLAGEGVGHAQKAFSNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSRLQSKALESLEEATRLEKNNSDLIFELAVQYAKHRNLTAALRSARHFFNETGGSVIKAWILLALILSAQQRFPEAEVVTDAGLDQTARWEQGSLLKLKAKLKVSQLKPMDAIETYRYLLALVQAQRKSSGSFQISSKVDDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKEYSAAILHTEGILFEGRGQNIEALNASINAVLVEPNHIPSKLLMSALIHKMGTKALPAARSMLSDALRIEPTNRMAWYYLGLVHKHDGRISDAADCFQAASMLEELDPIESFSNFF 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02550 694 Gene3D Tetratricopeptide repeat domain 452 690 IPR011990 GO:0005515
Vivi2g02550 694 SUPERFAMILY TPR-like 53 448 IPR011990 GO:0005515
Vivi2g02550 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Vivi2g02550 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Vivi2g02550 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Vivi2g02550 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Vivi2g02550 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Vivi2g02550 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Vivi2g02550 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Vivi2g02550 694 Coils Coil 401 421 - -
Vivi2g02550 694 Gene3D Tetratricopeptide repeat domain 21 202 IPR011990 GO:0005515
Vivi2g02550 694 Gene3D Tetratricopeptide repeat domain 285 451 IPR011990 GO:0005515
Vivi2g02550 694 SUPERFAMILY TPR-like 542 678 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02550 Vivi-Chr2 116416465 116420304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02550 11 694 Calmodulin-binding Proteins AT2G43040 70.203 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02550 K21843 - gmx:100814609 1150.19