Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02546 ATGGCTCTGAGTCTGACACCAGGTGCAATAACGAAGATGTATTTCACCTCGGAGGAATTTCAACCGGTGCTTCAAGTTATCGATCTGAAACTTGTTCAGTCGTCGCAGAATTACACTACTGAGAGGTACCGTGCCGTACTATCCGATGGCGAGTTTTATGAACACGGATTGCTCGCTACCCCGAAGAATGATCTGGTTCACTCTGGAAGATTGCAGAAAGGTTCCATTGTTAAACTTCTTCACTTCTTTACACACAACAATGTTCATCGTCACAAGTTTTTTATCATTGTTGACCTTGATGTTCTAATGGACACATGTGAAACGATTGGAAAACCTGTCTCAGCTGATGTAGGAAATTCCCCTAGTAGCAATGTTCATTCTAGTTCTTCTGAATCTCCAAGCTTTACTTTGATTGAGGAGCTTTCTAACTGGCATCCCTTCCAGTGA 447 0.4251 MALSLTPGAITKMYFTSEEFQPVLQVIDLKLVQSSQNYTTERYRAVLSDGEFYEHGLLATPKNDLVHSGRLQKGSIVKLLHFFTHNNVHRHKFFIIVDLDVLMDTCETIGKPVSADVGNSPSSNVHSSSSESPSFTLIEELSNWHPFQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02546 148 FunFam Replication protein A subunit 4 116 - -
Vivi2g02546 148 Gene3D - 4 116 IPR012340 -
Vivi2g02546 148 CDD RPA1N 8 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi2g02546 148 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Vivi2g02546 148 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02546 Vivi-Chr2 116378986 116379962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02546 1 113 Core DNA Replication Machinery Family AT4G19130 42.735 1.36e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02546 K07466 - vvo:131651846 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02546 2 116378986 116379962 Vivi2g02546 2 116378986 116379962 ECH