Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02545 ATGGCTCTGAGTCTGACACCAGGTGCGATAATGAAGATGTGTTTCACCTCCGAGGAATTTCAACCGGTGCTTCAAGTTATCGATCTGAAACTTGTTCAGTCGTCGCAGAATAACACCACTGAGAGGTACCGAGCCGTGCTATCTGATGGCGAGTTTTATGAACAAGGAATGCTCGCTACCCAGAAAAATGACCTCATTCATTCTGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTCTTCAGTTCGTTACTAACGATGTTCAGCGTCGCAAGATTATTATCATTGTTGACCTTGATGTTCTAATGGACATATGTGAAATGATTGGAAAACCTGTCCCAGCGCCAAAAGAAGCACCTGCACAAATTCCTGTTATTCAAACAGGAAATGTACAACCGCCTGTAGGAAACACTGCTGGAAATGCCGCCAGCGTTAATGTTAGACCTAATATGGCTGTGCCATCTATGGATCGTTCGAAAGTGAATTCTCCTGCTAGCGGTGTTTATTCTAACGGTTCTGAATCTGCACGATATGGTGGATCTTATGCCCCTCCTCCCTCTTATCCTAAACCTGAGCCTGGAGTTGGTGTGAATCGATCAACAGTAGTTAATGGTTCGTATGGTGAGCAGAATGCAAGTTTCCGCAATCCTCAACAACCATTGCAAAATTCTTATGTTCGCCCTCCTCAGCCTATGTACAGACAGCCAACTCCATATGCCAATAGAGGTCCTATGGGAAGAAATGATGCTCCCCCAAGGATAATTCCAATATCTGCATTGAATCCATATCAGAATATGTGGACAATTAAAGCTAGAGTAACTGCTAAGGGAGAACTTAGGCTTTATAACAATGCCCGAGGTGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATGCTGACGGTGGAGAAATACGGTCAACTTGCTTTAATGCGGTGGCTGATAAGTTCTATAGCATAATTGAAGTAGGTAAAGTCTATTTGGTTTCTCGGGGAACTTTAAAAGCAGCTCAGAGAAATTTCAATCACCTTCCTAATGATCAAGAGATAACCCTTGACGCCACATCTGATGTAGTGCCATGCCCTGAAGATGATAACTCAATTCCACAACAAATATATAATTTCCGCTCCATTGGTGACATTGAGAGTATTGAAAGCAACGCCATTGTGGATGTGATTGCTGTGGTGACTTCTATTAGTCCCACAGGTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCCGGTCGAAGTGTTGAATTAACTATATGGGGAAACTTTTGCAACACTGAAGGACAGAGGCTTCAAAATATTTGTGACTCTGGGGCCTTTCCAATTTTAGCTGTAAAATCTGCCAGAGTAAATGAATTCAATGGGAAATCTGTTGGGACCATAGCCACTAGCCAATTAGTTGTAGATCCTGATTTTCCAGAGGCTACTACACTGAGAGAATGGTTTGAAAATGAAGGTAGGAATGTCCCAAGTCAATCTATTTCCAGAGATTCATCTTTTGGTAAAAGTGATGTGCGTAAGACTATATCTCAAATTAAGGATGAAAAGTTAGGGACTTCAGAGAAGCCTGATTGGATAACTGTCTGTGCAAATGTTGCATACATTAAAGTTGATAATTTTTGCTACACAGCTTGTCCTATCATGACAGGAGATAGGCAATGTAACAAAAAGGTTACCAACAATGGAGATGGGAAATGGCGCTGTGACAAGTGTGACAAGTCTGTTGATGCTTGTGATTATAGGTACTTGCTGCAAATGCAGATACAGGATCACACTGGCCAAACATGGGTTACTGCTTTCCAGGAGGGCGGTGAGGATATCTTGGGTATATCTGCAAAAGATTTGTATTATCTGAAATATGAAGAACAAGATGAGGAAAAATTTGCAGAAATCATTCGCAAGGTTGTCTTAACCAGATATATTTTCAAGCTAAAAGTAAAAGAAGAGATGTACAATGACGAACAACGTGTTAAGTCAACGTTAGTAAAAGTAGAGAAGATAAACTTTGCATCTGATGCCAGATCTCTTCTGGGTATGATTGATAAACTTAAGTCTGAAACTGGACTGGGGAGCGTTGAAACCGGACAAGCTGCACCACCAGTATATACTCCTACAAAGAGTTACACTAATACTGGAAGAGATTATGGGACAGCAAATCAAGTGGGTCAGTATGGAAACCAACCTGGCAGCTCTTTTACTTCATCAGGGGCTCCAAATTCTTACATGTCATGTAGTAACTGTGGTGTCTCTGGTCATAGCTCTGCACAATGCTTAAACCTTAGAAATCAATCTGGCCAGTCTGCTGGAGGGGCCTTCACCAACAGGGTATCTACTGGATCAGACGGTGCTTCTCGTAATTGCTTTAAATGCAATCAAGCTGGACATTGGGCAAAAGACTGTCCTAGTGTCACTGCTGCACAACCGGATCAGCGTATGCAGTTCCCATCGGCTGGATCAGGCGGTGCTCCTGGTGAATGCTTTAAATGTCATCAAGCAGGACATTGGGCAAGAGACTGCCCTGGTATCAGTGCAGCACCTCCATCTCATGGAAACAGCAATGCAGTGCAAGGAAGATATGGCATTGCTCAAAATCAGCAGTATGGACGATATTGA 2646 0.4233 MALSLTPGAIMKMCFTSEEFQPVLQVIDLKLVQSSQNNTTERYRAVLSDGEFYEQGMLATQKNDLIHSGRLQKGSIVKLLQFVTNDVQRRKIIIIVDLDVLMDICEMIGKPVPAPKEAPAQIPVIQTGNVQPPVGNTAGNAASVNVRPNMAVPSMDRSKVNSPASGVYSNGSESARYGGSYAPPPSYPKPEPGVGVNRSTVVNGSYGEQNASFRNPQQPLQNSYVRPPQPMYRQPTPYANRGPMGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRLYNNARGEGKVFSFDLLDADGGEIRSTCFNAVADKFYSIIEVGKVYLVSRGTLKAAQRNFNHLPNDQEITLDATSDVVPCPEDDNSIPQQIYNFRSIGDIESIESNAIVDVIAVVTSISPTGSIMRKNGTETQKRSLQLKDMSGRSVELTIWGNFCNTEGQRLQNICDSGAFPILAVKSARVNEFNGKSVGTIATSQLVVDPDFPEATTLREWFENEGRNVPSQSISRDSSFGKSDVRKTISQIKDEKLGTSEKPDWITVCANVAYIKVDNFCYTACPIMTGDRQCNKKVTNNGDGKWRCDKCDKSVDACDYRYLLQMQIQDHTGQTWVTAFQEGGEDILGISAKDLYYLKYEEQDEEKFAEIIRKVVLTRYIFKLKVKEEMYNDEQRVKSTLVKVEKINFASDARSLLGMIDKLKSETGLGSVETGQAAPPVYTPTKSYTNTGRDYGTANQVGQYGNQPGSSFTSSGAPNSYMSCSNCGVSGHSSAQCLNLRNQSGQSAGGAFTNRVSTGSDGASRNCFKCNQAGHWAKDCPSVTAAQPDQRMQFPSAGSGGAPGECFKCHQAGHWARDCPGISAAPPSHGNSNAVQGRYGIAQNQQYGRY 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02545 881 FunFam Replication protein A subunit 365 503 - -
Vivi2g02545 881 FunFam Replication protein A subunit 252 362 - -
Vivi2g02545 881 ProSiteProfiles Zinc finger CCHC-type profile. 837 851 IPR001878 GO:0003676|GO:0008270
Vivi2g02545 881 Gene3D - 365 503 IPR012340 -
Vivi2g02545 881 SUPERFAMILY Nucleic acid-binding proteins 252 366 IPR012340 -
Vivi2g02545 881 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi2g02545 881 Gene3D - 252 361 IPR012340 -
Vivi2g02545 881 CDD RPA1_DBD_C 520 693 IPR047192 -
Vivi2g02545 881 SMART c2hcfinal6 754 770 IPR001878 GO:0003676|GO:0008270
Vivi2g02545 881 SMART c2hcfinal6 797 813 IPR001878 GO:0003676|GO:0008270
Vivi2g02545 881 SMART c2hcfinal6 836 852 IPR001878 GO:0003676|GO:0008270
Vivi2g02545 881 SUPERFAMILY Nucleic acid-binding proteins 517 694 IPR012340 -
Vivi2g02545 881 Gene3D - 832 859 - -
Vivi2g02545 881 CDD RPA1_DBD_A 255 358 - -
Vivi2g02545 881 Gene3D - 4 114 IPR012340 -
Vivi2g02545 881 Pfam Replication protein A OB domain 376 480 IPR031657 -
Vivi2g02545 881 CDD RPA1_DBD_B 387 494 - -
Vivi2g02545 881 FunFam Replication protein A subunit 4 115 - -
Vivi2g02545 881 Pfam Zinc knuckle 797 813 IPR001878 GO:0003676|GO:0008270
Vivi2g02545 881 Pfam Zinc knuckle 836 851 IPR001878 GO:0003676|GO:0008270
Vivi2g02545 881 Pfam Replication factor-A C terminal domain 536 687 IPR013955 -
Vivi2g02545 881 MobiDBLite consensus disorder prediction 198 229 - -
Vivi2g02545 881 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Vivi2g02545 881 SUPERFAMILY Nucleic acid-binding proteins 371 500 IPR012340 -
Vivi2g02545 881 ProSiteProfiles Zinc finger CCHC-type profile. 798 813 IPR001878 GO:0003676|GO:0008270
Vivi2g02545 881 Gene3D - 504 694 IPR012340 -
Vivi2g02545 881 Pfam OB-fold nucleic acid binding domain 266 353 IPR004365 GO:0003676
Vivi2g02545 881 Gene3D - 750 822 - -
Vivi2g02545 881 CDD RPA1N 8 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi2g02545 881 FunFam Replication protein A subunit 504 694 - -
Vivi2g02545 881 SUPERFAMILY Retrovirus zinc finger-like domains 788 852 IPR036875 GO:0003676|GO:0008270
Vivi2g02545 881 MobiDBLite consensus disorder prediction 153 242 - -
Vivi2g02545 881 NCBIfam replication factor-a protein 1 (rpa1) 239 693 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi2g02545 881 PANTHER REPLICATION FACTOR A 1, RFA1 266 682 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi2g02545 881 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02545 Vivi-Chr2 116315673 116319099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02545 1 781 Core DNA Replication Machinery Family AT5G45400 50.820 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02545 K07466 - gmx:100778597 1166.37