Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g02545 | ATGGCTCTGAGTCTGACACCAGGTGCGATAATGAAGATGTGTTTCACCTCCGAGGAATTTCAACCGGTGCTTCAAGTTATCGATCTGAAACTTGTTCAGTCGTCGCAGAATAACACCACTGAGAGGTACCGAGCCGTGCTATCTGATGGCGAGTTTTATGAACAAGGAATGCTCGCTACCCAGAAAAATGACCTCATTCATTCTGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTCTTCAGTTCGTTACTAACGATGTTCAGCGTCGCAAGATTATTATCATTGTTGACCTTGATGTTCTAATGGACATATGTGAAATGATTGGAAAACCTGTCCCAGCGCCAAAAGAAGCACCTGCACAAATTCCTGTTATTCAAACAGGAAATGTACAACCGCCTGTAGGAAACACTGCTGGAAATGCCGCCAGCGTTAATGTTAGACCTAATATGGCTGTGCCATCTATGGATCGTTCGAAAGTGAATTCTCCTGCTAGCGGTGTTTATTCTAACGGTTCTGAATCTGCACGATATGGTGGATCTTATGCCCCTCCTCCCTCTTATCCTAAACCTGAGCCTGGAGTTGGTGTGAATCGATCAACAGTAGTTAATGGTTCGTATGGTGAGCAGAATGCAAGTTTCCGCAATCCTCAACAACCATTGCAAAATTCTTATGTTCGCCCTCCTCAGCCTATGTACAGACAGCCAACTCCATATGCCAATAGAGGTCCTATGGGAAGAAATGATGCTCCCCCAAGGATAATTCCAATATCTGCATTGAATCCATATCAGAATATGTGGACAATTAAAGCTAGAGTAACTGCTAAGGGAGAACTTAGGCTTTATAACAATGCCCGAGGTGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATGCTGACGGTGGAGAAATACGGTCAACTTGCTTTAATGCGGTGGCTGATAAGTTCTATAGCATAATTGAAGTAGGTAAAGTCTATTTGGTTTCTCGGGGAACTTTAAAAGCAGCTCAGAGAAATTTCAATCACCTTCCTAATGATCAAGAGATAACCCTTGACGCCACATCTGATGTAGTGCCATGCCCTGAAGATGATAACTCAATTCCACAACAAATATATAATTTCCGCTCCATTGGTGACATTGAGAGTATTGAAAGCAACGCCATTGTGGATGTGATTGCTGTGGTGACTTCTATTAGTCCCACAGGTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCCGGTCGAAGTGTTGAATTAACTATATGGGGAAACTTTTGCAACACTGAAGGACAGAGGCTTCAAAATATTTGTGACTCTGGGGCCTTTCCAATTTTAGCTGTAAAATCTGCCAGAGTAAATGAATTCAATGGGAAATCTGTTGGGACCATAGCCACTAGCCAATTAGTTGTAGATCCTGATTTTCCAGAGGCTACTACACTGAGAGAATGGTTTGAAAATGAAGGTAGGAATGTCCCAAGTCAATCTATTTCCAGAGATTCATCTTTTGGTAAAAGTGATGTGCGTAAGACTATATCTCAAATTAAGGATGAAAAGTTAGGGACTTCAGAGAAGCCTGATTGGATAACTGTCTGTGCAAATGTTGCATACATTAAAGTTGATAATTTTTGCTACACAGCTTGTCCTATCATGACAGGAGATAGGCAATGTAACAAAAAGGTTACCAACAATGGAGATGGGAAATGGCGCTGTGACAAGTGTGACAAGTCTGTTGATGCTTGTGATTATAGGTACTTGCTGCAAATGCAGATACAGGATCACACTGGCCAAACATGGGTTACTGCTTTCCAGGAGGGCGGTGAGGATATCTTGGGTATATCTGCAAAAGATTTGTATTATCTGAAATATGAAGAACAAGATGAGGAAAAATTTGCAGAAATCATTCGCAAGGTTGTCTTAACCAGATATATTTTCAAGCTAAAAGTAAAAGAAGAGATGTACAATGACGAACAACGTGTTAAGTCAACGTTAGTAAAAGTAGAGAAGATAAACTTTGCATCTGATGCCAGATCTCTTCTGGGTATGATTGATAAACTTAAGTCTGAAACTGGACTGGGGAGCGTTGAAACCGGACAAGCTGCACCACCAGTATATACTCCTACAAAGAGTTACACTAATACTGGAAGAGATTATGGGACAGCAAATCAAGTGGGTCAGTATGGAAACCAACCTGGCAGCTCTTTTACTTCATCAGGGGCTCCAAATTCTTACATGTCATGTAGTAACTGTGGTGTCTCTGGTCATAGCTCTGCACAATGCTTAAACCTTAGAAATCAATCTGGCCAGTCTGCTGGAGGGGCCTTCACCAACAGGGTATCTACTGGATCAGACGGTGCTTCTCGTAATTGCTTTAAATGCAATCAAGCTGGACATTGGGCAAAAGACTGTCCTAGTGTCACTGCTGCACAACCGGATCAGCGTATGCAGTTCCCATCGGCTGGATCAGGCGGTGCTCCTGGTGAATGCTTTAAATGTCATCAAGCAGGACATTGGGCAAGAGACTGCCCTGGTATCAGTGCAGCACCTCCATCTCATGGAAACAGCAATGCAGTGCAAGGAAGATATGGCATTGCTCAAAATCAGCAGTATGGACGATATTGA | 2646 | 0.4233 | MALSLTPGAIMKMCFTSEEFQPVLQVIDLKLVQSSQNNTTERYRAVLSDGEFYEQGMLATQKNDLIHSGRLQKGSIVKLLQFVTNDVQRRKIIIIVDLDVLMDICEMIGKPVPAPKEAPAQIPVIQTGNVQPPVGNTAGNAASVNVRPNMAVPSMDRSKVNSPASGVYSNGSESARYGGSYAPPPSYPKPEPGVGVNRSTVVNGSYGEQNASFRNPQQPLQNSYVRPPQPMYRQPTPYANRGPMGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRLYNNARGEGKVFSFDLLDADGGEIRSTCFNAVADKFYSIIEVGKVYLVSRGTLKAAQRNFNHLPNDQEITLDATSDVVPCPEDDNSIPQQIYNFRSIGDIESIESNAIVDVIAVVTSISPTGSIMRKNGTETQKRSLQLKDMSGRSVELTIWGNFCNTEGQRLQNICDSGAFPILAVKSARVNEFNGKSVGTIATSQLVVDPDFPEATTLREWFENEGRNVPSQSISRDSSFGKSDVRKTISQIKDEKLGTSEKPDWITVCANVAYIKVDNFCYTACPIMTGDRQCNKKVTNNGDGKWRCDKCDKSVDACDYRYLLQMQIQDHTGQTWVTAFQEGGEDILGISAKDLYYLKYEEQDEEKFAEIIRKVVLTRYIFKLKVKEEMYNDEQRVKSTLVKVEKINFASDARSLLGMIDKLKSETGLGSVETGQAAPPVYTPTKSYTNTGRDYGTANQVGQYGNQPGSSFTSSGAPNSYMSCSNCGVSGHSSAQCLNLRNQSGQSAGGAFTNRVSTGSDGASRNCFKCNQAGHWAKDCPSVTAAQPDQRMQFPSAGSGGAPGECFKCHQAGHWARDCPGISAAPPSHGNSNAVQGRYGIAQNQQYGRY | 881 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g02545 | 881 | FunFam | Replication protein A subunit | 365 | 503 | - | - | |
Vivi2g02545 | 881 | FunFam | Replication protein A subunit | 252 | 362 | - | - | |
Vivi2g02545 | 881 | ProSiteProfiles | Zinc finger CCHC-type profile. | 837 | 851 | IPR001878 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | Gene3D | - | 365 | 503 | IPR012340 | - | |
Vivi2g02545 | 881 | SUPERFAMILY | Nucleic acid-binding proteins | 252 | 366 | IPR012340 | - | |
Vivi2g02545 | 881 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 102 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Vivi2g02545 | 881 | Gene3D | - | 252 | 361 | IPR012340 | - | |
Vivi2g02545 | 881 | CDD | RPA1_DBD_C | 520 | 693 | IPR047192 | - | |
Vivi2g02545 | 881 | SMART | c2hcfinal6 | 754 | 770 | IPR001878 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | SMART | c2hcfinal6 | 797 | 813 | IPR001878 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | SMART | c2hcfinal6 | 836 | 852 | IPR001878 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | SUPERFAMILY | Nucleic acid-binding proteins | 517 | 694 | IPR012340 | - | |
Vivi2g02545 | 881 | Gene3D | - | 832 | 859 | - | - | |
Vivi2g02545 | 881 | CDD | RPA1_DBD_A | 255 | 358 | - | - | |
Vivi2g02545 | 881 | Gene3D | - | 4 | 114 | IPR012340 | - | |
Vivi2g02545 | 881 | Pfam | Replication protein A OB domain | 376 | 480 | IPR031657 | - | |
Vivi2g02545 | 881 | CDD | RPA1_DBD_B | 387 | 494 | - | - | |
Vivi2g02545 | 881 | FunFam | Replication protein A subunit | 4 | 115 | - | - | |
Vivi2g02545 | 881 | Pfam | Zinc knuckle | 797 | 813 | IPR001878 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | Pfam | Zinc knuckle | 836 | 851 | IPR001878 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | Pfam | Replication factor-A C terminal domain | 536 | 687 | IPR013955 | - | |
Vivi2g02545 | 881 | MobiDBLite | consensus disorder prediction | 198 | 229 | - | - | |
Vivi2g02545 | 881 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 109 | IPR012340 | - | |
Vivi2g02545 | 881 | SUPERFAMILY | Nucleic acid-binding proteins | 371 | 500 | IPR012340 | - | |
Vivi2g02545 | 881 | ProSiteProfiles | Zinc finger CCHC-type profile. | 798 | 813 | IPR001878 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | Gene3D | - | 504 | 694 | IPR012340 | - | |
Vivi2g02545 | 881 | Pfam | OB-fold nucleic acid binding domain | 266 | 353 | IPR004365 | GO:0003676 | |
Vivi2g02545 | 881 | Gene3D | - | 750 | 822 | - | - | |
Vivi2g02545 | 881 | CDD | RPA1N | 8 | 101 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Vivi2g02545 | 881 | FunFam | Replication protein A subunit | 504 | 694 | - | - | |
Vivi2g02545 | 881 | SUPERFAMILY | Retrovirus zinc finger-like domains | 788 | 852 | IPR036875 | GO:0003676|GO:0008270 | |
Vivi2g02545 | 881 | MobiDBLite | consensus disorder prediction | 153 | 242 | - | - | |
Vivi2g02545 | 881 | NCBIfam | replication factor-a protein 1 (rpa1) | 239 | 693 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Vivi2g02545 | 881 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 266 | 682 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Vivi2g02545 | 881 | MobiDBLite | consensus disorder prediction | 155 | 176 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g02545 | Vivi-Chr2 | 116315673 | 116319099 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g02545 | 1 | 781 | Core DNA Replication Machinery Family | AT5G45400 | 50.820 | 0.0 | 812 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g02545 | K07466 | - | gmx:100778597 | 1166.37 |