Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02531 ATGGCAGATGGTGACCATCCTTCGTATCAAAACGTTATTGTCATAATTATTGCCGTTGGTTCAGCTGCATTAGTTGTTGTCTCAATGTATCGTGTCATGAGCATTTGGTTTTCTCGCCACCAACAAAGCACCACCGCAGATCAAACTCAAAGCACCACCGCAGATCAAACTCAAAGCCCCCCACAACTACCACAGTTTGCAGCTACTTTGAGCCTCGGCGAAAGTGCATCCTCATCAATAGTACACCTAATTCCAACACACAAGTATCATAAAAGAAATAAAGTTGATGTGGTTTCGGATGATGATGAAGGCGGCACCACCGCGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAAGACTATGCCGGAGTGCTTGCACTCTTTTCATGTACCGTGTATCGACATGTGGCTTCATTCGCATTCGAGTTGTCCCGTTTGCCGCGCCATTGCCGCCCCTTCGCCTGCAGTGAATGAAGATCTTCACAGAATAGATATGAGTCATACCGTTCCACTCCCTATCATGCAGAGTGGATTGGTGAGATTTTGA 558 0.4695 MADGDHPSYQNVIVIIIAVGSAALVVVSMYRVMSIWFSRHQQSTTADQTQSTTADQTQSPPQLPQFAATLSLGESASSSIVHLIPTHKYHKRNKVDVVSDDDEGGTTACAVCLGDFEEGEELKTMPECLHSFHVPCIDMWLHSHSSCPVCRAIAAPSPAVNEDLHRIDMSHTVPLPIMQSGLVRF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02531 185 SMART ring_2 109 150 IPR001841 -
Vivi2g02531 185 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 153 IPR044675 -
Vivi2g02531 185 SUPERFAMILY RING/U-box 90 157 - -
Vivi2g02531 185 CDD RING-H2_EL5-like 109 151 - -
Vivi2g02531 185 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vivi2g02531 185 Pfam Ring finger domain 108 151 IPR001841 -
Vivi2g02531 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 157 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02531 Vivi-Chr2 115876546 115877467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02531 14 164 C3H Transcription Factor Family AT5G17600 31.646 9.58e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02531 - - vvo:131646659 346.665