Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02530 ATGGAAAATGATAAGAGTGATTCTTCTTTTGGTCACAACAAGGTTATTTTCCAAATTATTATCTTAGTTTCAGCTGCATTTATTGTTTCTTCCGTGTACCATCTCATAGCCATTTGTTTGTGTCACCGACGACGAACCACAACAGATCAAAATCAACTACAACCACCAAATCAAGCTGCGATGCCTAGCCTCGCCGAAAGGACATCCTCATCAGCACCTGTAGTACACCGAATTCCAACACACAAGTATCACAAAAGAGATAAAGTTGATGCTGTTTCGGACGATGAAGGCGATGACACCTGTGCCGTATGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAGGACTATGCCGGAGTGCTTGCATTCTTATCATGTAGATTGTATTGACATGTGGCTCCATTCCCACTCGAGTTGCCCTATTTGTCGTGCTGGTGCTGCTCCTTCGCAGGCAGTGAGATCAAATCATCACAGCATAGATATGAATATGGCTCCACTTGGTACTGTCATGCAAAGTGGTTTGGCGCGATGGTGA 534 0.4438 MENDKSDSSFGHNKVIFQIIILVSAAFIVSSVYHLIAICLCHRRRTTTDQNQLQPPNQAAMPSLAERTSSSAPVVHRIPTHKYHKRDKVDAVSDDEGDDTCAVCLGDFEEGEELRTMPECLHSYHVDCIDMWLHSHSSCPICRAGAAPSQAVRSNHHSIDMNMAPLGTVMQSGLARW 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02530 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 147 IPR044675 -
Vivi2g02530 177 Pfam Ring finger domain 99 143 IPR001841 -
Vivi2g02530 177 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vivi2g02530 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 147 IPR013083 -
Vivi2g02530 177 CDD RING-H2_EL5-like 101 143 - -
Vivi2g02530 177 MobiDBLite consensus disorder prediction 50 71 - -
Vivi2g02530 177 SUPERFAMILY RING/U-box 94 149 - -
Vivi2g02530 177 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02530 Vivi-Chr2 115870295 115872911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02530 8 170 C3H Transcription Factor Family AT1G04360 32.258 1.98e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02530 - - psat:127119859 190.274