Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02528 ATGGAAAATGATGAGGGTGATCCTACTTCTGATCACAAGGTTATTTTCCAATTTATTGTTGTAGTTTCAGCTGCATTTGTTGTTACTTCAGTGTACCGACTCATAGCCATTTGTTTGTGTGGTCGAGGACCAACCACAACAAATCAAAACCGACTACAACCACCAAATCACGCTGCGATACCGAGCCTCGTTGAAAGGACATCCTCATCAGTAGCTGTAGCACACCGAATTCCAACACACAAGTACCACAAAAGAAATAAAGGTGATGTTTCGGATGATGAAGGAGGCACCTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAAGACTATGCCGGAGTGCTTGCACTCTTTTCATGTACATTGCATTGACTTGTGGCTCCATTCGCATTTGAGTTGCCCTATTTGTCGCACTGGTGCTGGTGCTGGTGCTGCCCCTTTGCCGGCTGTGAGAGCAAATCATCACAGCATAGATATGAATATGACTCCTCTTGGTGGTACTGCCATGCAAAGTGGATTCCTGAGATGGTGA 540 0.4593 MENDEGDPTSDHKVIFQFIVVVSAAFVVTSVYRLIAICLCGRGPTTTNQNRLQPPNHAAIPSLVERTSSSVAVAHRIPTHKYHKRNKGDVSDDEGGTCAVCLGDFEEGEELKTMPECLHSFHVHCIDLWLHSHLSCPICRTGAGAGAAPLPAVRANHHSIDMNMTPLGGTAMQSGFLRW 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02528 179 CDD RING-H2_EL5-like 98 140 - -
Vivi2g02528 179 SUPERFAMILY RING/U-box 85 143 - -
Vivi2g02528 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 141 IPR044675 -
Vivi2g02528 179 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Vivi2g02528 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 143 IPR013083 -
Vivi2g02528 179 SMART ring_2 98 139 IPR001841 -
Vivi2g02528 179 Pfam Ring finger domain 97 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02528 Vivi-Chr2 115834496 115835700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02528 19 169 C3H Transcription Factor Family AT1G04360 30.636 4.39e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02528 - - vvo:131649848 221.476