Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g02484 | ATGGGTCGGAAGAACGGCGCCGTTTCAGCCAGCGAACCAGTCGCCGAACAACAAACCGACAACAACAACACCCAACTCGAATCCTCTAAGAAGAAGAACAAAAAGAGCAAACATAATCTTCAAAACGAAGAAGACACCCCCAAAAGAAAGCACGAAGAACTCAACATTCAAAACGACACCGAATCGGAGAAGAAAAGTAAGAAGAAGAAAAAGCACAACAAATCGAAAGACAACGGGGAGGAAAACGGCACTGGTAATGGCGATAGCGGCGTTAACGGCGCGGAGACTGTTTCGGCGTCGGATGAACCTATTGTGGTTACCGGAAAGAATGCCGGCGATGAGAAATATGCTGCTGTCAAGACTTTTGTTGGTTCGGGGCTTCCTGATAACGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCGTTTTTGTTGGACGGTCGTGATTTGATTGGAATCGCAGCCACTGGTTCAGGCAAGACACTTGCTTTTGGATTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAGTAAGGGTTCCTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTTTCTCCTACCAGGGAGCTAGCTCAACAAATATTTGATGTTTTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCGCTGCACTGAAATCTGGCATTGATATTGTTATTGGAACCCCTGGTCGTATTCAAGATCTGATTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATTCTTGGTCAGACAGGTTCAGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGCTAGCAGTTCATCAGTTAGCGCAAGAATTTATGGACCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTCTTGGATGAGCGTTCCCGTGATAAGCGCCTGCTTGCTTTACTAGAGAAGTACCATAAATCTAAGAAGAATAGAGTATTGGTTTTTGTTTTGTACAAAATGGAAACCACACGTGTTGAAAGAATGCTTCAACAAGGGGGTTGGAAGGCTGTGTCAATTAGTGGGGACAAATCACAGCATGAGCGCACAAAGGCGCTGTCATTATTCAAGGAGGGAACCTGTCCTTTGTTGATTGCCACCGATGTGGCTGCACGAGGATTGGATATTCCGGATGTCGAAGTAGTGATAAACTATAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGAACAGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACATCTGAATAAGGGACTTGCTGGAGAGCTTGTGAATGTTTTAAGAGAAGCAGGACAAGTTGTGCCAGATGATCTTTTAAAATTTGGCACACATGTGAAGAAAAAGGAGTCCAAGCTTTATGGATCTCACTTCAAGGAAATCGCTGTTGATGCTCCAAAGTCTAAAAAAACAACATTCGACTCTGACGATGAAGACTAA | 1620 | 0.4395 | MGRKNGAVSASEPVAEQQTDNNNTQLESSKKKNKKSKHNLQNEEDTPKRKHEELNIQNDTESEKKSKKKKKHNKSKDNGEENGTGNGDSGVNGAETVSASDEPIVVTGKNAGDEKYAAVKTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKSKGSSKGRNPLCLMLSPTRELAQQIFDVLCDAGKSCGVESVCLYGGTSKGPQIAALKSGIDIVIGTPGRIQDLIEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTGSVRQMVMFSATWPLAVHQLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERSRDKRLLALLEKYHKSKKNRVLVFVLYKMETTRVERMLQQGGWKAVSISGDKSQHERTKALSLFKEGTCPLLIATDVAARGLDIPDVEVVINYSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGSHFKEIAVDAPKSKKTTFDSDDED | 539 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g02484 | 539 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 273 | 281 | IPR000629 | - | |
Vivi2g02484 | 539 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 149 | 327 | IPR014001 | - | |
Vivi2g02484 | 539 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 66 | 499 | - | - | |
Vivi2g02484 | 539 | SMART | helicmild6 | 383 | 464 | IPR001650 | - | |
Vivi2g02484 | 539 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Vivi2g02484 | 539 | Pfam | DEAD/DEAH box helicase | 143 | 313 | IPR011545 | GO:0003676|GO:0005524 | |
Vivi2g02484 | 539 | SMART | ultradead3 | 137 | 344 | IPR014001 | - | |
Vivi2g02484 | 539 | MobiDBLite | consensus disorder prediction | 1 | 103 | - | - | |
Vivi2g02484 | 539 | CDD | SF2_C_DEAD | 341 | 473 | - | - | |
Vivi2g02484 | 539 | FunFam | ATP-dependent RNA helicase RhlB | 330 | 507 | - | - | |
Vivi2g02484 | 539 | MobiDBLite | consensus disorder prediction | 82 | 96 | - | - | |
Vivi2g02484 | 539 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 194 | 475 | IPR027417 | - | |
Vivi2g02484 | 539 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 340 | 503 | IPR001650 | - | |
Vivi2g02484 | 539 | CDD | DEADc | 136 | 328 | - | - | |
Vivi2g02484 | 539 | Pfam | Helicase conserved C-terminal domain | 355 | 464 | IPR001650 | - | |
Vivi2g02484 | 539 | Gene3D | - | 92 | 330 | IPR027417 | - | |
Vivi2g02484 | 539 | MobiDBLite | consensus disorder prediction | 37 | 66 | - | - | |
Vivi2g02484 | 539 | Gene3D | - | 331 | 506 | IPR027417 | - | |
Vivi2g02484 | 539 | Coils | Coil | 23 | 46 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g02484 | Vivi-Chr2 | 113930918 | 113935927 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g02484 | 119 | 472 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.427 | 1.32e-53 | 185 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g02484 | K14811 | - | gmx:100806057 | 803.512 |