Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02484 ATGGGTCGGAAGAACGGCGCCGTTTCAGCCAGCGAACCAGTCGCCGAACAACAAACCGACAACAACAACACCCAACTCGAATCCTCTAAGAAGAAGAACAAAAAGAGCAAACATAATCTTCAAAACGAAGAAGACACCCCCAAAAGAAAGCACGAAGAACTCAACATTCAAAACGACACCGAATCGGAGAAGAAAAGTAAGAAGAAGAAAAAGCACAACAAATCGAAAGACAACGGGGAGGAAAACGGCACTGGTAATGGCGATAGCGGCGTTAACGGCGCGGAGACTGTTTCGGCGTCGGATGAACCTATTGTGGTTACCGGAAAGAATGCCGGCGATGAGAAATATGCTGCTGTCAAGACTTTTGTTGGTTCGGGGCTTCCTGATAACGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCGTTTTTGTTGGACGGTCGTGATTTGATTGGAATCGCAGCCACTGGTTCAGGCAAGACACTTGCTTTTGGATTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAGTAAGGGTTCCTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTTTCTCCTACCAGGGAGCTAGCTCAACAAATATTTGATGTTTTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCGCTGCACTGAAATCTGGCATTGATATTGTTATTGGAACCCCTGGTCGTATTCAAGATCTGATTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATTCTTGGTCAGACAGGTTCAGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGCTAGCAGTTCATCAGTTAGCGCAAGAATTTATGGACCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTCTTGGATGAGCGTTCCCGTGATAAGCGCCTGCTTGCTTTACTAGAGAAGTACCATAAATCTAAGAAGAATAGAGTATTGGTTTTTGTTTTGTACAAAATGGAAACCACACGTGTTGAAAGAATGCTTCAACAAGGGGGTTGGAAGGCTGTGTCAATTAGTGGGGACAAATCACAGCATGAGCGCACAAAGGCGCTGTCATTATTCAAGGAGGGAACCTGTCCTTTGTTGATTGCCACCGATGTGGCTGCACGAGGATTGGATATTCCGGATGTCGAAGTAGTGATAAACTATAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGAACAGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACATCTGAATAAGGGACTTGCTGGAGAGCTTGTGAATGTTTTAAGAGAAGCAGGACAAGTTGTGCCAGATGATCTTTTAAAATTTGGCACACATGTGAAGAAAAAGGAGTCCAAGCTTTATGGATCTCACTTCAAGGAAATCGCTGTTGATGCTCCAAAGTCTAAAAAAACAACATTCGACTCTGACGATGAAGACTAA 1620 0.4395 MGRKNGAVSASEPVAEQQTDNNNTQLESSKKKNKKSKHNLQNEEDTPKRKHEELNIQNDTESEKKSKKKKKHNKSKDNGEENGTGNGDSGVNGAETVSASDEPIVVTGKNAGDEKYAAVKTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKSKGSSKGRNPLCLMLSPTRELAQQIFDVLCDAGKSCGVESVCLYGGTSKGPQIAALKSGIDIVIGTPGRIQDLIEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTGSVRQMVMFSATWPLAVHQLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERSRDKRLLALLEKYHKSKKNRVLVFVLYKMETTRVERMLQQGGWKAVSISGDKSQHERTKALSLFKEGTCPLLIATDVAARGLDIPDVEVVINYSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGSHFKEIAVDAPKSKKTTFDSDDED 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02484 539 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 273 281 IPR000629 -
Vivi2g02484 539 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 327 IPR014001 -
Vivi2g02484 539 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 66 499 - -
Vivi2g02484 539 SMART helicmild6 383 464 IPR001650 -
Vivi2g02484 539 MobiDBLite consensus disorder prediction 11 26 - -
Vivi2g02484 539 Pfam DEAD/DEAH box helicase 143 313 IPR011545 GO:0003676|GO:0005524
Vivi2g02484 539 SMART ultradead3 137 344 IPR014001 -
Vivi2g02484 539 MobiDBLite consensus disorder prediction 1 103 - -
Vivi2g02484 539 CDD SF2_C_DEAD 341 473 - -
Vivi2g02484 539 FunFam ATP-dependent RNA helicase RhlB 330 507 - -
Vivi2g02484 539 MobiDBLite consensus disorder prediction 82 96 - -
Vivi2g02484 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 475 IPR027417 -
Vivi2g02484 539 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 503 IPR001650 -
Vivi2g02484 539 CDD DEADc 136 328 - -
Vivi2g02484 539 Pfam Helicase conserved C-terminal domain 355 464 IPR001650 -
Vivi2g02484 539 Gene3D - 92 330 IPR027417 -
Vivi2g02484 539 MobiDBLite consensus disorder prediction 37 66 - -
Vivi2g02484 539 Gene3D - 331 506 IPR027417 -
Vivi2g02484 539 Coils Coil 23 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02484 Vivi-Chr2 113930918 113935927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02484 119 472 Eukaryotic Initiation Factors Gene Family AT3G19760 33.427 1.32e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02484 K14811 - gmx:100806057 803.512