Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02470 ATGGGCAACAGTGAAATGGATAAAACCACAAAAGAGAAGGAGTCAAAGACGCCGCCACCGACGTCACAGGAGCAGTCTTCGACCACCACCAGCACCGGAGCAGTTAATACAGATTGGGCCAGCTTTCAGGCATATTCTCCTATGCCTCCACATGGATTCATGGCACAAAGTCCCCAAGCTCACCCTTATATGTGGGGTGTCCAGCATATTATGCCTCCTTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATGCCTCCGGGATCTTATCCATACAGTCCTTACGCGATGCCTACTCCCAATGGTATTGCTGAGGCTTCGGGAAACACTCCTGCCAGCATAGAAACTGATGGTAAGCCTTCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAACATGATTACAGGGAAAAATAATGAACATGGTAAAACAACTGGCACATCTGCTAATGGAAATCACTCAAAGAGTGGTGAAAGTGGAAGTTTTGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAGAATGGCTCTCAATTGAAATCTGGAGACAGGCAGGACTCTTTCGAAGGTGAACCATCTCAAAATGGAAGTTCAGTGCACACTTCTCAAAACGGGGGACTTAATACACCTAACGCGGTGGTTAATCAAACTATGTCTATCATGCCTATCACCGCGGCTGGTACTCCTGGAGCTGTTACTGGTCCGGCGACAAACTTAAATATAGGAATGGAGTATTGGGGAACGCCAGCTCCATCCAACATTCCTGCTCTCCGTGGAAAGGTTCCGGCTACTACCGTCGCGGGCGGGATAGTTACTGGTGGATCACGGGATAGTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGACGGAAGCAGTCTAATAGGGAATCTGCCCGGAGATCCAGGTTGCGCAAACAGGCTGAATGCGACGAATTAGCTCAGCGTGCTGATGTTTTGAAAGAAGAAAATGCTACCCTCCGATTAGAAATAAGCCGCATTAGAAGCGAGTATGAGCAGCTACTTTCCGAGAACACGGCTCTGAAGAGACTTGAAGAACAACCGAGTAACGATCAAAACGTTGGTAACGACACTCAACAGAGTGGACAGACAGAGGACGTGCAAGCTGGTCATTAG 1209 0.4715 MGNSEMDKTTKEKESKTPPPTSQEQSSTTTSTGAVNTDWASFQAYSPMPPHGFMAQSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSMPPGSYPYSPYAMPTPNGIAEASGNTPASIETDGKPSEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTTGTSANGNHSKSGESGSFEGTSEGSDANSQNGSQLKSGDRQDSFEGEPSQNGSSVHTSQNGGLNTPNAVVNQTMSIMPITAAGTPGAVTGPATNLNIGMEYWGTPAPSNIPALRGKVPATTVAGGIVTGGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLRLEISRIRSEYEQLLSENTALKRLEEQPSNDQNVGNDTQQSGQTEDVQAGH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02470 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 314 329 IPR004827 GO:0003700|GO:0006355
Vivi2g02470 402 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 394 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vivi2g02470 402 Pfam Disordered region downstream of MFMR 136 274 - -
Vivi2g02470 402 SMART brlzneu 307 371 IPR004827 GO:0003700|GO:0006355
Vivi2g02470 402 SUPERFAMILY Leucine zipper domain 310 366 IPR046347 GO:0003700|GO:0006355
Vivi2g02470 402 Pfam bZIP transcription factor 307 369 IPR004827 GO:0003700|GO:0006355
Vivi2g02470 402 MobiDBLite consensus disorder prediction 370 402 - -
Vivi2g02470 402 MobiDBLite consensus disorder prediction 19 35 - -
Vivi2g02470 402 CDD bZIP_plant_GBF1 312 362 IPR045314 GO:0003700|GO:0006355
Vivi2g02470 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 309 372 IPR004827 GO:0003700|GO:0006355
Vivi2g02470 402 MobiDBLite consensus disorder prediction 115 230 - -
Vivi2g02470 402 MobiDBLite consensus disorder prediction 147 230 - -
Vivi2g02470 402 MobiDBLite consensus disorder prediction 1 18 - -
Vivi2g02470 402 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Vivi2g02470 402 MobiDBLite consensus disorder prediction 309 332 - -
Vivi2g02470 402 Coils Coil 327 378 - -
Vivi2g02470 402 Gene3D - 310 378 - -
Vivi2g02470 402 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02470 Vivi-Chr2 113676510 113680832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02470 1 396 bZIP Transcription Factor Family AT2G35530 61.800 2.15e-163 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi2g02470 MFMR_assoc 2.1e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02470 K09060 - gmx:778122 609.372