Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02445 ATGTATGGTGATTGTCAAGTTATGTCAACAATGGGAGGAGGAAATGTAGTAACAAACTCAGAATCTCTCTTCTCTTCTCCGATCCACAACCCTAACTTCAACTTCATGCCAACCATGCCTTTTCAGCCTTTTTCTTCCTCCATGAAAGAAGAAGATGGAATGTTGAGAGGGAAGGAAGAGATAATGGATCAAAGTGGTTCAGGTAGCGAACAAGTTGAAGACAAATCAGGAAATGAACAAGAGATCAATAATGAAGAACAACAAAAACAAGCTGCTAAGAAGAAACGTTATCATAGACATACTGTTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGATAAACAAAGAATGAAACTAAGCCATGATTTAGGCCTCAAACCACGCCAGGTTAAGTTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCCGATAATGTGATACTTAGAGCAGAAAATGAAGGCTTAAAGAATGAGAACTATCGGTTACAAGCTGCTCTACGTAATATTGTCTGTCCTAATTGTGGTGGGCCATGTATTATGGGCCCTGATTTGGGCCTTGATGATCATCAACTTCGAATTGAAAATGCACGTTTAAGAGAAGAGCTAGAACGTGTGTGTTGTATAACATCAAGATACACTGGTCGTTCGCTCCAAACAATGGCACCACCTCCATCTCTAATGCCACCATCACTAGATTTGGACATGAACATATACCCAACAAGACATTTTGTTGATCATATTTCACCATGCACAGAAATGATTCCAGTCCCTATGTTACCAACTGAATCATCACATTTTCAAGAGGGTGGTCTTTTACTAATGGAAGATGAGAAATCACTGGCTATGGAACTTGCGGCTTCTTCGATGGCTGAGCTTGTTAAGATGTGTCGGATGAATGAACCGCTTTGGATTCGGAACGGTGAGAATGAAAGGGAAGTTCTTAATTTTGATGAGCATGCTAGGCTTTTTCAATGGCCTTTGAATCTTAAGCAGAGAAGTGAGTTGAGGTCTGAAGCTACACGTGATAATGCTGTTGTTATTATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGATTTGTTTCCAACAATAGTTGCTAGAGCAAGAACTGTCCAAATTATAGCTTCTGGTGCTTCTGGTCATACAAGTGGGACTCTTCAGCTGATGCATGCAGAATTTCAAGTTCTTTCTCCATTGGTGTCCACTAGAGAGACTCATTTTCTTCGATACTGTCAGCAAAATGCCGAGGAAGGAACTTGGGCCATTGTTGATTTTCCTGTTGACAGCTTCCACCAAAACTTTCATCATTCATATCCCAAATACTGCAGAAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTTATAGAGAAACCTGTGCATCAAATATTCAGCAACTATGTCTATAGTGGAATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAGAGACAATGTGAAAGGGTTGCGAGTCAAATGGCTAGAAACATATCTGATCTTGGAGTGATACCTTCTCCTGAGGCGCGAAAGAACTTGATGAAACTAGCTAACAGGATGATAAAAACTTTTAGTCTTAACATGACTACTTGTGGTGGTCAATCATGGACTGCTATATCAGATTCACCAGAAGACACTGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGCCAACCTAATGGCGTGATACTCGCGGCTGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAGGTCTTCGATCTTCTCCGAGACGAACGCCACAGATCTCAGATGGATGCTCTTTCTAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGTTCACATCCTGGCAACTGCATTTCGCTTCTTCGCATAAATGTAGCAAGTAACTCATCACAGAATGTAGAGCTAATGCTGCAAGAAAGTTGCACAGATCAATCAGGAAGCTTACTAGTCTACACGACAATTGATGTCGATTCAATCCAGCTAGCCATGAGTGGTGAAGACCCTTCGTGCATTGCACTTCTTCCACAAGGGTTCATGATAGTGCCAATGGTTTCATCAAATACTGACACTTCAAGCCTTGGTGGAAACTCATCTGATCAAGGAACACCATCATCAACTACTACTACTAATGCTGCTGCTGCTGCCGCGGCTGCTAACTCGGGCTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCACCTCTGCAACACCCTGCATCAAATTGAAAGTGCTCTTTGTAGCACCACTAACAATTACCTTGTTGGGTCTTCCAATGAACCAACCACTAGTGCACCTCCCAAGTAG 2451 0.419 MYGDCQVMSTMGGGNVVTNSESLFSSPIHNPNFNFMPTMPFQPFSSSMKEEDGMLRGKEEIMDQSGSGSEQVEDKSGNEQEINNEEQQKQAAKKKRYHRHTVRQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENEGLKNENYRLQAALRNIVCPNCGGPCIMGPDLGLDDHQLRIENARLREELERVCCITSRYTGRSLQTMAPPPSLMPPSLDLDMNIYPTRHFVDHISPCTEMIPVPMLPTESSHFQEGGLLLMEDEKSLAMELAASSMAELVKMCRMNEPLWIRNGENEREVLNFDEHARLFQWPLNLKQRSELRSEATRDNAVVIMNSVTLVDAFLDAQKWMDLFPTIVARARTVQIIASGASGHTSGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHHSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVIEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASQMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLLVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMVSSNTDTSSLGGNSSDQGTPSSTTTTNAAAAAAAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIESALCSTTNNYLVGSSNEPTTSAPPK 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02445 816 SMART HOX_1 92 155 IPR001356 GO:0003677
Vivi2g02445 816 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Vivi2g02445 816 Gene3D - 78 161 - -
Vivi2g02445 816 Pfam Homeodomain 94 149 IPR001356 GO:0003677
Vivi2g02445 816 ProSiteProfiles START domain profile. 286 523 IPR002913 GO:0008289
Vivi2g02445 816 Gene3D - 343 503 IPR023393 -
Vivi2g02445 816 Coils Coil 75 95 - -
Vivi2g02445 816 CDD START_ArGLABRA2_like 290 519 - -
Vivi2g02445 816 Pfam START domain 296 520 IPR002913 GO:0008289
Vivi2g02445 816 SUPERFAMILY Homeodomain-like 86 152 IPR009057 -
Vivi2g02445 816 SMART START_1 295 520 IPR002913 GO:0008289
Vivi2g02445 816 FunFam Homeobox-leucine zipper protein HDG1 79 167 - -
Vivi2g02445 816 SUPERFAMILY Bet v1-like 288 522 - -
Vivi2g02445 816 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Vivi2g02445 816 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 90 794 IPR042160 -
Vivi2g02445 816 MobiDBLite consensus disorder prediction 74 92 - -
Vivi2g02445 816 SUPERFAMILY Bet v1-like 548 792 - -
Vivi2g02445 816 CDD homeodomain 94 152 IPR001356 GO:0003677
Vivi2g02445 816 MobiDBLite consensus disorder prediction 61 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02445 Vivi-Chr2 112743983 112748953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02445 8 807 Homeobox Transcription Factor Family AT5G46880 55.152 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g02445 START 9.7e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02445 - - vvo:131651800 1590.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02445 2 112743983 112748953 Vivi2g02445 2 112743983 112748953 ECH
Vivi2g02445 2 112743983 112748953 Vivi1g04335 1 92565739 92571419 ECH