Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02440 ATGGTAGAAGGAGGAAGAATGCGATTATCCGAGGAAGCTAGAAATGGGTTAGAATTTTTGAAACGTAAGAGGCTTCAGCGTGCACAAGCCGCCGCTGCCTCTCAGACTAATGTTGCTAACATGATGAATAGAAGTGGAGGAGATGCTTTGAGAGCTTCAGCTTCATGTGGCACAAGATTGCACAGTGATCCGGATGTGTTTTTCAAAAGGAAGGTGGATAAGTTTGATACAAGTGATTTGGAATGGACTGAGAATATTCCAGAGTGTCCTGTGTATTCTCCGACAAAGGAGGAATTTGAAGATCCTTTGATTTACTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCACCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAAGAGAAAGCAGGATTTAAGTTTACAACTAGAGTACAGCCTCTTCGCCTTGCTGAGTGGGACACTGAAGACAAAGTCACCTTTTTTATGAGTGGAAGAAATTATACATTCCGCGATTATGAGAAAATGGCAAACAAGGTTTTCGCACGAAGATATTGCAGCTCTGGATGTCTTCCAGCCACTTACTTGGAAAAGGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGACACTGTTGAATATGCATGTGATGTTGATGGTAGTGCATTTTCATCTTCTCCTACTGATCAGCTTGGGAATAGCAAATGGAATTTAAAGAATCTTTCCCGTTTGCCCAAATCAACTTTGCGTCTCTTGGAAACTTCAATTCCGGGAGTAACAGAACCTATGCTATACATTGGAATGCTGTTTAGTATGTTTGCGTGGCACGTGGAGGATCATTATTTGTACAGCATTAATTACCAGCATTGTGGTGCATCAAAAACATGGTATGGTATCCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATACTACTGATATTTTGTCAAGTGACGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTTTATTTCCGCCTAATATTTTGTTGGAACATAAAGTCCCTGTCTATAAAGCTGTTCAAAAGCCAGGAGAGTTTGTCATAACCTTCCCTAGAGCATATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCTCTTGATGATTGGTTTCCTCTTGGGGCTATTGCGAGCCGGCGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCAATGCTTATTCATTCAAGCGTGGAACTTGAAGATTCGGACTTTCCTTCCCCAGACTTGTTAGCGCCTAATAAAACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAGCACTGTGCCAGTTGGTTACTTATGAAATCAAGGGCATGTACTAGTGTTTCTTCACATTCGCACGGCACAATTCTCTGTAGCCTGTGCAAACGTGACTGTTACATTGCTTATGTTGGCTGCAGCTGTCACATGCACCCTGTATGCCTACGTCATGAGGTTAAATCTCTTGACTTCAGCTGTGGGAAGAAGCACACTCTATATTTGAGAGAGGATATTGGGGACATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATTGGATGAGATAGGCAAGCAATCCAAAAGCGAACAAAATATGTATTCATATCCTTTGTCAGATATGTTTCAGAGAGCTGAAACAAGTGGATATGAACCATATTGTGAGCTTAAATTTGATTCTATGATGGAGTTTTATACAGCTCCAGAACTGTCAACAAATAATCAAGAGTGTGGCACACAAAGTCAATTTGTATCAGGACATTACTCAGAAAACCATAAACCAGAAGTGTCTGAGGTTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACATCTTGAGTGTTCCTCTGCTAATAAAGATGCCGAGGTGCAGACTAATTTGAAAGTGGGCATTATTGATTGCAAAGAACTTGGTGAAACAATATCCAACAATGCATGCGGATCTTCACTATTCCCTTCTCGGTATCATGAAAGTTCGGTTAAAGTGCATGATCTTCAGAAAGCCGATGTGAAGCCTATAGTGGATAATGACAGTGATGATTCTGATTCAGGAATATTTAGGGCAAAGCGCCCCGCTTCTCTAAAGGCCGAGAAAAGAAATTTGAAGGTTGTGGCAGTGAAACATTCTGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAAAAGCAACAGGCAACAGATGAATGTCAGAACCAGTGAATCAAGTTATAAATATAACCCAGTTAGTCACAAAGTTGATATTGGAATTTCCTTTAAGGACAGATTTGCAAGGGGAAATGACACTCCCATTCCTGTAAGATATAAAAAGTCAGGCAATGAGGAAGTAAGTATGAACATGCAACAAAATCACCACAGGAGAGAGAGGTTTCAGCAAACTTATAGAGAAGCGCCATCCATTGAGATTGGGTCTAAGCGACTTAAAGTCCGAGGCCCTTCATTTTTGGGCTTAGAGAGCAGGTTGAATTGA 2571 0.4127 MVEGGRMRLSEEARNGLEFLKRKRLQRAQAAAASQTNVANMMNRSGGDALRASASCGTRLHSDPDVFFKRKVDKFDTSDLEWTENIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDYEKMANKVFARRYCSSGCLPATYLEKEFWHEIGCGKMDTVEYACDVDGSAFSSSPTDQLGNSKWNLKNLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYTTDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALDDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHSSVELEDSDFPSPDLLAPNKTKISFINLLRFQHCASWLLMKSRACTSVSSHSHGTILCSLCKRDCYIAYVGCSCHMHPVCLRHEVKSLDFSCGKKHTLYLREDIGDMEAAAKMFEQEDGILDEIGKQSKSEQNMYSYPLSDMFQRAETSGYEPYCELKFDSMMEFYTAPELSTNNQECGTQSQFVSGHYSENHKPEVSEVSFSAASTLCSLSEHLECSSANKDAEVQTNLKVGIIDCKELGETISNNACGSSLFPSRYHESSVKVHDLQKADVKPIVDNDSDDSDSGIFRAKRPASLKAEKRNLKVVAVKHSEQQGLKRLKKVLPEGKSNRQQMNVRTSESSYKYNPVSHKVDIGISFKDRFARGNDTPIPVRYKKSGNEEVSMNMQQNHHRRERFQQTYREAPSIEIGSKRLKVRGPSFLGLESRLN 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02440 856 Pfam jmjN domain 90 122 IPR003349 -
Vivi2g02440 856 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 812 - -
Vivi2g02440 856 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Vivi2g02440 856 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Vivi2g02440 856 SMART JmjN_1 88 129 IPR003349 -
Vivi2g02440 856 Gene3D Cupin 89 442 - -
Vivi2g02440 856 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Vivi2g02440 856 SMART cupin_9 236 406 IPR003347 -
Vivi2g02440 856 FunFam Lysine-specific demethylase isoform A 84 433 - -
Vivi2g02440 856 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Vivi2g02440 856 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02440 Vivi-Chr2 112407888 112414879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02440 85 543 JUMONJI Transcription Factor Family AT1G08620 33.150 1.03e-61 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi2g02440 JmjC 2.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02440 - - psat:127119779 1646.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02440 2 112407888 112414879 Vivi2g02440 2 112407888 112414879 ECH