Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02433 ATGAATGGGAGACACCACCGCCATCAATTTTCCGCCACCGCAAAGCCGCAACAACACCACCGCGCCAAATCGAATTTCCTCTATGTTGAAAAATCCAAACTTAGTTCTTCATCCAACTCCGCGGTGGTTGAAGAACGAGTTTCCCCTGAAGACATTGATGTCAACGGCAATAGCAGTAACAATAACAACGCTGCTGATGACGTGGATAGCTCAAGCACGGCGAGAGAAGGTGGCGACGATGATGATATTGATCTTATTATCGATAATAGGCTTGATAAACTGCTAAGTGAAATTCAACAACCGGAATTGTCCATTGAAGAGATCACAATCAATGATCAATTGCAGCAAGATGAGTTACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCACCCTTGATACATGGAAAGGCTTGCGTTGTTTTCAGATACATATAAACATTGATATTTTGGATGAAATAGGCATTACTGCTAAGGTGAATTCTGTTAATGAAGTTGAAACTATATGCAGCGATTCGGATGACTTTTTATACTCTTTCAAAGTTCAATACCTTCCACCGATTGTTTTGACGTGTTTATTACCTAAGTCATATCCGAGCCACCAACCACCTATATTTACGATCTCTGTAAAGTGGTTGGAATCTGCGAAGATTTTAAGTTTATGTTCCAAGTTGGATTCAATATGGGCAGAACAGCAAGGGCAGGAAGTGATTTACCATTGGGTAGACTGGTTACATAGTTCTTCTCTTTCTCATTTGGGATTCGATCAGGAGATTAGACTAGGTCCTTATGGCCTGAATCGTGTTGCGGACTCACGTGTGGTTTCGGGAATTGGATGCATCGATGCTGATATTCCTTTTTTACAAAGCTACAATAACGAGAGACGCCATCAGAACTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACCGAATTCGTCCAATTACCATGTAAACATTATTTTTGCCGCAAATGCGTGCAGACCTTTACCCAAATTCACGTAAAAGAAGGGAACATTAGTAATCTTCAATGTTTGGACGCAAAATGCAAGGACATGATTCCACCTAGCCTTTTAAAACGTTTTCTTGGCGATGAAGATTACAAACGTTGGGAATCAGTGATGTTAGAGAAAACACTTGCATCAATGTCCGATGTTGTTTATTGTTCGAGATGCGAAACACCCTGTATAGAGGATGAAGACCAACATGCTCAGTGCCCAAAATGCTTTTTTAGCTTTTGTACTCTTTGCAGGGAACGACGCCATGTTGGCATAGAATGCATGACACTAGATATGAAGCTTCAGCTTCTGCAGGATCGTCAAAATTCATCCCAATTAAAGGGAAATCAAAGGCGTCTTGAACTTGAAAAGATCAATGAAATGCTCAGTGAGAGAGAAATTCGCCGTGATTCCAAGTTTTGTCCGTCTTGTGACATGGCGATTTCTCGAACAGAAGGTTGTAATAAAATGAAGTGCGGTAACTGTGAACAATACTTCTGCTACCGCTGCAACCAAGCACTTGATGCATCAGATCCATATGGACATTTCAGGGACGGGTCTTGCGAACTGTTCCCGCGAGAAATGGTTGATAACTGGCAAGCACAAGCACGCATAAATCCTCTCCAGGAAATACAACAAGTACATGCTGAACTCTTTCACCTCGGTGGGTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAGATTGGAAACAATAATCACATGTTATGTTGGGCATGCCAAAGCCATTACTGCTACCTATGCAACGCAATTGTCAGGCGTGGCACTAAGCATTATGGACCAAAAGGTTGCAAACAGCACAGTGAGGGATAG 1851 0.4149 MNGRHHRHQFSATAKPQQHHRAKSNFLYVEKSKLSSSSNSAVVEERVSPEDIDVNGNSSNNNNAADDVDSSSTAREGGDDDDIDLIIDNRLDKLLSEIQQPELSIEEITINDQLQQDELLVVESIYGENVFTLDTWKGLRCFQIHINIDILDEIGITAKVNSVNEVETICSDSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESAKILSLCSKLDSIWAEQQGQEVIYHWVDWLHSSSLSHLGFDQEIRLGPYGLNRVADSRVVSGIGCIDADIPFLQSYNNERRHQNFLKELHECCICYSEYPGTEFVQLPCKHYFCRKCVQTFTQIHVKEGNISNLQCLDAKCKDMIPPSLLKRFLGDEDYKRWESVMLEKTLASMSDVVYCSRCETPCIEDEDQHAQCPKCFFSFCTLCRERRHVGIECMTLDMKLQLLQDRQNSSQLKGNQRRLELEKINEMLSEREIRRDSKFCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNQALDASDPYGHFRDGSCELFPREMVDNWQAQARINPLQEIQQVHAELFHLGGSACPSCRQFNVKIGNNNHMLCWACQSHYCYLCNAIVRRGTKHYGPKGCKQHSEG 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02433 616 MobiDBLite consensus disorder prediction 52 70 - -
Vivi2g02433 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 391 IPR013083 -
Vivi2g02433 616 SMART RWD2001b 117 252 IPR006575 GO:0005515
Vivi2g02433 616 FunFam RBR-type E3 ubiquitin transferase 302 386 - -
Vivi2g02433 616 SMART ring_2 395 483 IPR001841 -
Vivi2g02433 616 SMART ring_2 565 594 IPR001841 -
Vivi2g02433 616 SMART ring_2 307 354 IPR001841 -
Vivi2g02433 616 CDD Rcat_RBR_RNF14 465 530 IPR047548 GO:0008270
Vivi2g02433 616 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 153 522 IPR031127 GO:0004842|GO:0016567
Vivi2g02433 616 MobiDBLite consensus disorder prediction 29 44 - -
Vivi2g02433 616 Gene3D - 453 559 - -
Vivi2g02433 616 ProSiteProfiles RWD domain profile. 117 252 IPR006575 GO:0005515
Vivi2g02433 616 SUPERFAMILY RING/U-box 552 613 - -
Vivi2g02433 616 CDD BRcat_RBR_RNF14 386 437 - -
Vivi2g02433 616 SUPERFAMILY RING/U-box 302 386 - -
Vivi2g02433 616 ProSitePatterns Zinc finger RING-type signature. 324 333 IPR017907 -
Vivi2g02433 616 SUPERFAMILY RING/U-box 467 522 - -
Vivi2g02433 616 Gene3D Ubiquitin Conjugating Enzyme 104 254 IPR016135 -
Vivi2g02433 616 ProSiteProfiles TRIAD supradomain profile. 303 533 IPR044066 -
Vivi2g02433 616 Pfam RWD domain 113 247 IPR006575 GO:0005515
Vivi2g02433 616 Pfam IBR domain, a half RING-finger domain 463 512 IPR002867 GO:0008270
Vivi2g02433 616 Pfam IBR domain, a half RING-finger domain 375 433 IPR002867 GO:0008270
Vivi2g02433 616 CDD RING-HC_ITT1-like 301 360 - -
Vivi2g02433 616 MobiDBLite consensus disorder prediction 1 81 - -
Vivi2g02433 616 SMART ibrneu5 462 527 IPR002867 GO:0008270
Vivi2g02433 616 SMART ibrneu5 375 433 IPR002867 GO:0008270
Vivi2g02433 616 FunFam RBR-type E3 ubiquitin transferase 448 559 - -
Vivi2g02433 616 SUPERFAMILY UBC-like 111 247 IPR016135 -
Vivi2g02433 616 ProSiteProfiles Zinc finger RING-type profile. 307 351 IPR001841 -
Vivi2g02433 616 SUPERFAMILY RING/U-box 376 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02433 Vivi-Chr2 111728771 111733563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02433 302 543 ARIADNE family AT3G27710 22.892 3.73e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02433 K11971 - gmx:100500662 900.968