Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02414 ATGCAACATCAATCGTCTTCACCAAAACATTCCATTCTATCCTTCTACCAACTTTCTCTCTTTCCGATACTTCCAATTTCACCAAATTTCCGATTACTCTTCCCACCCCCCATACTTCCTCATCCAAACCCCAACTCCCCTTCTCTCTCTCACCGATATTCTCGTGAACGTTACGCTCACATCAGAATGAGTTTTCAAGACTTAGAATCCGGCCGCCGCAACCTAATCAACGGCAAACAAAACCCGACGCAGGCGGTTGCTTCCGGCGTATTTCAGATCAACACTGCCGTCTCCACTTTTCAGAGACTCGTCAACACACTCGGAACCCCCAAAGACACGCCGGAACTCCGCGAGAAACTGCATAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACGTCGGATAGACTTAAACAAGCCAGTGAAATTGATCATCATGCCGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCCAAAGAATTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCGCAGCGTCTTTCAGCCGAGAGGGAGACAGCTTACGCTCCTTTTGTTCCTTTTGTTCCGCAAGATGCTCAGCCATCCAGCTATACAGTCAGTGGAGTAGGTGTTAGTTCGGATAAAAGTCAAGAACAGCGTGCCCTTGTGGAATCCAAAAGACAGGAGGTAATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATCGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATTGGGGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGATCAAACATTGAGCATTCGCATGAAGCCACTGTCCAAGCAAAATCAGAACTTGTGAAAGCTTCTAAAACACAACGATCAAGCTCATCTTTGCTCTAG 939 0.4473 MQHQSSSPKHSILSFYQLSLFPILPISPNFRLLFPPPILPHPNPNSPSLSHRYSRERYAHIRMSFQDLESGRRNLINGKQNPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDRLKQASEIDHHADVNATKKIADAKLAKEFQAVLKEFQKAQRLSAERETAYAPFVPFVPQDAQPSSYTVSGVGVSSDKSQEQRALVESKRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATVQAKSELVKASKTQRSSSSLL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02414 312 Gene3D - 243 310 - -
Vivi2g02414 312 SUPERFAMILY t-snare proteins 79 294 IPR010989 GO:0016020|GO:0016192
Vivi2g02414 312 CDD SynN 80 193 IPR006011 GO:0016020
Vivi2g02414 312 ProSitePatterns Syntaxin / epimorphin family signature. 245 284 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi2g02414 312 FunFam Syntaxin-22 like 232 312 - -
Vivi2g02414 312 Gene3D - 77 190 - -
Vivi2g02414 312 SMART SynN_4 70 184 IPR006011 GO:0016020
Vivi2g02414 312 PANTHER SYNTAXIN 83 309 IPR045242 -
Vivi2g02414 312 Pfam Syntaxin-like protein 87 186 IPR006011 GO:0016020
Vivi2g02414 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 301 IPR000727 -
Vivi2g02414 312 CDD SNARE_Qa 259 300 - -
Vivi2g02414 312 Pfam SNARE domain 276 311 IPR000727 -
Vivi2g02414 312 SMART tSNARE_6 234 301 IPR000727 -
Vivi2g02414 312 FunFam Syntaxin-22 like 77 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02414 Vivi-Chr2 111056928 111059081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02414 63 311 SNARE and Associated Proteins AT5G46860 73.622 4.83e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02414 - - vvo:131651791 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02414 2 111056928 111059081 Vivi2g02414 2 111056928 111059081 ECH